RNA id: TU172106


Basic Information

Item Value
RNA id TU172106
length 1915
RNA type TUCP
GC content 0.56
exon number 2
gene id G136900
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18375330 ~ 18378297 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttttttttttttttctgtaggcattctggaaaaaaaatagtttaaaaatggGTCCAGAAAAAACTCAaacaccacaaaaacaacacaaaccgTAGGAAAAAAGGCTTTTCCGATCGACTTAAAGAAAGAGACTGCTGTACTTTATATACAAACTGTGTGAAGAGTTGCTGGGGGAGAGAGTGCAGTGAAGggaaaaatcaaattaaaaggcCTTAACACTCTTCTTTATAGTAAACCCAGCACTTACATCACAAACCCACTGGCCAATggcaggaaacaggaagttgTCATCCGCTATGGGCAGCTGGGTTTTAAGTTTAGTCTCAAGTGTTGCCTGAAGACAAATCATTTTGCAGTTTCCTTCAGATCTGACTGGACAGGCTGCTTCCCCGGTCTCCACCCCTTCGACTGGGTGtcccaccccccaaaacaaaaggACCTCCTACTCCGGGATAAGCCAGGTCTGAAGgtggacaaacaaacaaaccaaacaaaaaaaaagtctgctctCCTTGGCACGTTGAGGTTTAACTGACGAGTCCAGGAACAGGGCTTGAGAACAACCGACCTCAGGGCGACGCCACACTGGACCTGGGAGCTGTGGATTCAAAAATCAACATGGAGCGACAACGTGTAGGTTGTGTGGTTCGATTAGCAAGGTGTGGCGAGTTCGGAAACCTCTAGAACCCCCACCGCCCCCCATACACACCATGTACACGCCTTTGTCTCGCCCAATCTCATATAGTATAGACACTACCGAGGTCCCGTTCACTTCGTGCGTAAAGTACGTCAGCACAGCAGCTTtgatcaggaaaaaaaataaaaataaaataaaaaaaaatacacactaGAACAGAATCTAGACCCAACCCCCTGCCTCCCAGTCTGCACCAAATCTGGTCGTCTCTTCACCCCATTGTCACCTTGGTTGATGGGTTCCTACAGTGTCTTTCAAAAGGGGAGCAACTGGACGACTGACCTTCGCTCTCCAGATCCCAAACCGAAACCCCCACCACCTCccaacacacaaaccaaaacaaacagtgtTCCCACAGGAAGATAAAAAGGTATTGATTGCCATGACACAAGTCGACGGGGGACCGGGCGCGTCGGGAACGCAGCTGCACGGAGCAGGAAGAGGTGCAGTGCTTCGCCGGGGAAGACGCGAATCGGACGCCCCCTGCAGAACGGGAGAACGCCAGCCACGGCATGGCTTCCCAGGGCTCGGGGGCAAGAGGAGCAGCGGTCAGGGGTCCAGCTCGGTGTCGTCGAAGCCGTGGAATGATTCGGCATCGCTGTCTTTCTCGAACAGCTGGTGCAGAGGTCCGGCTTCCGCGGCGGCCCGGCTCAGTCCCGGAGAGGCCTTCTTGTTCGGCTTCTCCGACACCTGGGCGGAGACTTTGGCCGGTGGCTTTTTGCCTGTCTTGGCCGCCTCGCCCTCTTTGACTTCCTCGCCGGTCTTGGCCACCCCCACCTTGGCCTCCTCACCTTCCTTGGCTTCCTTGACCATGCCCCCCTTGGCCTCCTCAGCCACATTGGCCAGGCCCTCCTTGCCTTCCTGGGCCACACCCTCCTCGGCCTTCTCACCCTCCTTGGCCTCCTTATGCTCTTTGCCCTCCTTGGCCTCACCTTCCTCCTCCGCCGGCACCGCAGGCCCCTGCAGGCGCTGCTCCATCAGCCGGATGAGCTCCACCTGCGTGTCGGCCGCGCTCTCCACACCCTCGGGCCCCGGCAGCACGCTGGCCACCAGGAAGGACTGCTGCAGCAGCTCGGGCTGGGCCGAGATGCCAGCCAGGGCCTCGGCCACCCAGCCTACCAGCTGCTGCAAGATGTCCTCGGCGCCGGCCCCCTCCGCCACACCCTGTGCCACCCAGGCGCTCCATCGGGCCCGCAGGAAGCCCCGCAGCACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172012 lncRNA downstream 195643 18140751 ~ 18179687 (-) True G136826
TU172002 lncRNA downstream 262427 18112676 ~ 18112903 (-) True G136820
TU171905 lncRNA downstream 403477 17912238 ~ 17971853 (-) True G136746
TU171911 lncRNA downstream 412086 17941472 ~ 17963244 (-) True G136750
TU171805 lncRNA downstream 651915 17720726 ~ 17723415 (-) False G136666
TU172125 lncRNA upstream 41712 18420009 ~ 18493905 (-) True G136915
TU172112 lncRNA upstream 61282 18439579 ~ 18442587 (-) True G136906
TU172114 lncRNA upstream 61282 18439579 ~ 18442587 (-) False G136906
TU172157 lncRNA upstream 138539 18516836 ~ 18537125 (-) True AMCG00012459
TU172164 lncRNA upstream 166621 18544918 ~ 18546313 (-) True G136951
AMCG00012449 mRNA downstream 48447 18323005 ~ 18326883 (-) True AMCG00012449
AMCG00012448 mRNA downstream 54357 18295215 ~ 18320973 (-) True AMCG00012448
AMCG00012441 mRNA downstream 97726 18261865 ~ 18277604 (-) True AMCG00012441
AMCG00012443 mRNA downstream 124324 18240923 ~ 18251006 (-) True AMCG00012443
AMCG00012444 mRNA downstream 167847 18195065 ~ 18207483 (-) True AMCG00012444
AMCG00012450 mRNA upstream 5381 18383678 ~ 18388229 (-) True AMCG00012450
AMCG00012455 mRNA upstream 91698 18469995 ~ 18476148 (-) True AMCG00012455
AMCG00012459 mRNA upstream 138539 18516836 ~ 18537069 (-) False AMCG00012459
AMCG00012461 mRNA upstream 190552 18568849 ~ 18569085 (-) True AMCG00012461
AMCG00012463 mRNA upstream 216904 18595201 ~ 18601943 (-) True AMCG00012463
TU172031 other downstream 138074 18205375 ~ 18237256 (-) True G136837
TU171956 other downstream 274703 18098180 ~ 18100627 (-) True AMCG00012437
TU171826 other downstream 604364 17768060 ~ 17770966 (-) False AMCG00012414
TU171825 other downstream 613876 17759979 ~ 17761454 (-) False AMCG00012416
TU171807 other downstream 651262 17720726 ~ 17724068 (-) True G136666
TU172290 other upstream 654306 19032603 ~ 19043449 (-) True AMCG00012472
TU172487 other upstream 1063630 19441927 ~ 19507394 (-) True G137199
TU172548 other upstream 1335865 19714162 ~ 19793531 (-) True G137246
TU172550 other upstream 1366038 19744335 ~ 19793531 (-) False G137246
TU172597 other upstream 1526125 19904422 ~ 19910378 (-) False AMCG00012503

Expression Profile