RNA id: TU172186


Basic Information

Item Value
RNA id TU172186
length 219
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G136968
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18614039 ~ 18614257 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGTGAAAGTGGGCTGCCGGGAATCCATGCTGGGAAGGAGAGCcggttaaataaattaatgcatggACTGTAGAGCGGTGgcttagatttttcttcttgtttatCAGTCTGCTTCCCACGAAATCCGTTAAGGCGATTTGTGCGAGTTTTGCAGCCTGTGGAGCGCACAGTGGCCATCCGTCTGCTTCTCTCGTCAAGCTCCATTCCGGttccaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172169 lncRNA downstream 57926 18553007 ~ 18556113 (-) True G136955
TU172164 lncRNA downstream 67726 18544918 ~ 18546313 (-) True G136951
TU172165 lncRNA downstream 68183 18544918 ~ 18545856 (-) False G136951
TU172157 lncRNA downstream 76914 18516836 ~ 18537125 (-) True AMCG00012459
TU172125 lncRNA downstream 120134 18420009 ~ 18493905 (-) True G136915
TU172222 lncRNA upstream 172699 18786956 ~ 18787155 (-) True G136997
TU172233 lncRNA upstream 288216 18902473 ~ 18902838 (-) True G137008
TU172240 lncRNA upstream 311288 18925545 ~ 18926343 (-) True G137014
TU172243 lncRNA upstream 313122 18927379 ~ 18930141 (-) True AMCG00012467
TU172337 lncRNA upstream 564882 19179139 ~ 19181358 (-) True G137094
AMCG00012463 mRNA downstream 12096 18595201 ~ 18601943 (-) True AMCG00012463
AMCG00012461 mRNA downstream 44954 18568849 ~ 18569085 (-) True AMCG00012461
AMCG00012459 mRNA downstream 76970 18516836 ~ 18537069 (-) False AMCG00012459
AMCG00012455 mRNA downstream 137891 18469995 ~ 18476148 (-) True AMCG00012455
AMCG00012450 mRNA downstream 225810 18383678 ~ 18388229 (-) True AMCG00012450
AMCG00012462 mRNA upstream 1656 18615913 ~ 18651892 (-) True AMCG00012462
AMCG00012467 mRNA upstream 315464 18929721 ~ 18933201 (-) False AMCG00012467
AMCG00012469 mRNA upstream 325715 18939972 ~ 18954308 (-) True AMCG00012469
AMCG00012468 mRNA upstream 345559 18959816 ~ 18967559 (-) True AMCG00012468
AMCG00012473 mRNA upstream 405238 19019495 ~ 19026095 (-) True AMCG00012473
TU172106 other downstream 235742 18375330 ~ 18378297 (-) True G136900
TU172031 other downstream 376783 18205375 ~ 18237256 (-) True G136837
TU171956 other downstream 513412 18098180 ~ 18100627 (-) True AMCG00012437
TU171826 other downstream 843073 17768060 ~ 17770966 (-) False AMCG00012414
TU171825 other downstream 852585 17759979 ~ 17761454 (-) False AMCG00012416
TU172290 other upstream 418346 19032603 ~ 19043449 (-) True AMCG00012472
TU172487 other upstream 827670 19441927 ~ 19507394 (-) True G137199
TU172548 other upstream 1099905 19714162 ~ 19793531 (-) True G137246
TU172550 other upstream 1130078 19744335 ~ 19793531 (-) False G137246
TU172597 other upstream 1290165 19904422 ~ 19910378 (-) False AMCG00012503

Expression Profile