RNA id: TU172188


Basic Information

Item Value
RNA id TU172188
length 1766
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G136969
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18615898 ~ 18653598 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttatttttaacttttattatgatttcttttttttttttttgtaagtaacAGGGACAGACGGTATCGCATGAACCTCGGCTCAAATCTGAAAGCAAGTCCTCCAGGGCCACAGCCCACCCAGAAAACGCTGAACCCCTCTCTAGACACCACTCTCATGGTTtgcattgcaatgtttttaaaagagagaataaagagaaggagaaaaattAAACGACTGACCTGCTGACCGTTTCAAATCACCAGGGACACTTAACTGATCATCTCACTGGCCAGGATTTGAAATTCTCTCTCCTTTCATCTCAGACGGGGGTGAAACCTGGCCGGCCAGCACTAACGGGAACCACTGCCTTGATGGCGGTGTCACAGCACTACAGGCAGACAACAGATCTGCCACAGCGCTGCAACACAGCCGGCTCGTTCTCCCCAGAGATCTCTCCGGGAAATGCTTTGCTGAGACAAGCCGAGCGCATTTCCCTCCTCGAGCGCTCTCTCCGTGTTGATCTGAGAAGATGGACCAGCACAGGAGGCTGTGAGAACTCCCTTTGTTACTCGCTGTTGGGTTTACATTTTCCAATAGGGAATTTCCAATAAATAAACTACTTTATATGGGACTGTGGATATTCTCACAGATTTATAGTGAAACAGCAGTAAgatcagggagagagagagagaaagaaggagaggaaaagagagatggggaggatgggggagaggaagagggaaagagatggacaggggaagagagagagagatgggcagggagagggagagagagatagagggagggagagagaaatggggaggaagagagagagagagaatggtgCGGTCAGACGGGATCAAGGACAGGATAGTGTCCCATTCAGCGCTTCGTCGGTGGGCTATGCAGCCTGGCACGCTCTACTGATAGTCTGAAcatacagtgtattttttttttctgaaatccaagaaaaaaaaacgaaaaaaaaaacaagaaacaaactgtAGCCTCAAGCTGACAGCTTCTATGCCAATTTCAATTACAACGGTCACACGTGGTAGTACTGTTTTGCAGGTTGGGATATCAAAAAGGCCTAactgataaaaatacaaatatacaatggCTATGACACATCTTGACATtacgttaaaaaaaacaacaaacagtaaaacaaagaaaactcaCCCCCccgaaataaaaataaaataaaaacacctaaTTAGCCTCTTTGATCTTTCCCAgtaccccccgccccccaatagcacatattatattaaataaggcacacatttacacatacaattaaaatttgGCTAGTTATTGAAATTATTCCACAGGCTTCTTTATTTACACTGATATCCACAAAGTTATTAATCACCGCAGTCTGTAGTAGATTAAAATCTGGGCTGAACTCGAGCCGTCTTGGTTTTTGAAAAGAAGGAGCTTTTCCCAAAACCACACGCGCCAAAACCCACCAGTATTCTCCAGTTCAATTCGTGTCCGTTTCACCTGGAGGAATTGGGGTGTTTGCCGTGGCGGCACATGCGGGCTCTCGTGTTTGGgggcgaggaggaggaagagttgTCCAACAAAGCGACGGAGGAAAACCAAACCACTTCCGCGCGTTTCGGAATCCGCCTCGATTCCAAATGACGACGCCCGGAAGTCATCCCCCAATCCCCGGCCCCCCAATATACGAGATCAACACATTCTCCCCAGGTGTATATGGCTTGAGGCTTTTACCACAGTCCAGGCAAAGGTGAAGCAGAGGGGggggggggcatC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172078 lncRNA upstream 140982 18473233 ~ 18474916 (+) True G136873
TU172070 lncRNA upstream 145114 18433570 ~ 18470784 (+) False G136866
TU172069 lncRNA upstream 145114 18467806 ~ 18470784 (+) True G136866
TU172043 lncRNA upstream 298822 18295215 ~ 18317076 (+) True G136848
TU172036 lncRNA upstream 346391 18261897 ~ 18269507 (+) True G136842
TU172232 lncRNA downstream 248914 18902512 ~ 18902871 (+) True G137007
TU172242 lncRNA downstream 278826 18932424 ~ 18933248 (+) True G137016
TU172261 lncRNA downstream 310936 18964534 ~ 18972066 (+) True G137031
TU172255 lncRNA downstream 366560 19020158 ~ 19026005 (+) True G137027
TU172291 lncRNA downstream 398346 19051944 ~ 19053829 (+) False AMCG00012471
AMCG00012458 mRNA upstream 63084 18545578 ~ 18552814 (+) True AMCG00012458
AMCG00012460 mRNA upstream 72712 18541417 ~ 18543186 (+) False AMCG00012460
AMCG00012456 mRNA upstream 103292 18493584 ~ 18512606 (+) True AMCG00012456
AMCG00012457 mRNA upstream 124427 18476711 ~ 18491471 (+) True AMCG00012457
AMCG00012453 mRNA upstream 149313 18445111 ~ 18466585 (+) True AMCG00012453
AMCG00012466 mRNA downstream 242816 18896414 ~ 18908734 (+) True AMCG00012466
AMCG00012464 mRNA downstream 261620 18915218 ~ 18925049 (+) True AMCG00012464
AMCG00012465 mRNA downstream 279986 18933584 ~ 18937478 (+) True AMCG00012465
AMCG00012471 mRNA downstream 393899 19047497 ~ 19053220 (+) True AMCG00012471
AMCG00012470 mRNA downstream 401042 19054640 ~ 19065913 (+) True AMCG00012470
TU172158 other upstream 71408 18539545 ~ 18544490 (+) True AMCG00012460
TU172065 other upstream 227592 18385289 ~ 18388306 (+) True G136864
TU171980 other upstream 481517 18132407 ~ 18134381 (+) True AMCG00012439
TU171871 other upstream 712088 17902832 ~ 17903810 (+) True G136720
TU171793 other upstream 771977 17840933 ~ 17843921 (+) True G136658
TU172324 other downstream 516150 19169748 ~ 19174421 (+) True G137083
TU172360 other downstream 584091 19237689 ~ 19238958 (+) True G137111
TU172558 other downstream 1161327 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 1237569 19891167 ~ 19895599 (+) False G137265
TU172707 other downstream 1677483 20331081 ~ 20341446 (+) True AMCG00012516

Expression Profile