RNA id: TU172255


Basic Information

Item Value
RNA id TU172255
length 4251
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G137027
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19020158 ~ 19026005 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTtctaataaacatttaatacaaaaataatctttacATATAATCTATACaataagttaaaaaacaaaaaattaagacAGTCAAGCAACACTCCCAACGCAGCTTGCACGTCATTCTCCGCTCCTTCTCAGAGTTCGGGCTCCATTGGGGCCGGATCTTCAATACTGGCGGCTTGGTGTTACATTCACTCTAAGGTCCTCTATAGCTGCAAAGAGTTCACGATCTAAATGTACAGGTTCCTTTTATCAAAAGTGAGAATCTTTCGCCTCAAACTGTagtgataaagaaaaaaaaaaaaaaaaaaaaagaaaccgactaaactgtaaatcaggaagcaaaacaaaacctaagaAGTCCTGGATTGGCAAACTCAAAGCCACACCATCCAAAACacgcaaaagaaaaaaaaaaaaaacaacaaagcccTCACACTGTTCTCTCTGATCAGCACAATCTTTTGTTAGCGGTTgtccccctccaaaaaaaataaaaattaaatttcGGGGGGACATGCGTTGAAACCGCTAGCGACAGGGATAGGTTGGCCGTCGTGGGAGGAGCACCGTTGCCCGCCTCTCCTGCTCAGATGAAGCTCTGTGGCAGTTTTCATCGGCGCAGAAGAGGACGGGAATTTcgttggagaaaataaaataaaaacacagcgtCCCTGGCTCGGACTTCCTTTCATCTGATCAAGTAGGCCAGGCTGGCGCCAATTCCCGCCACACCGGCGAAGGCCATCAAAGCTGTTCGGATGGTGGACTCGGGGTCCTCCACGTGGAAGAACTCTACGAAACCCTCCACGACTTGTTGTTGAGCAGCCACTCGCGCTGGTCCGCAAGCAGGTAGGACGAGATCTCTTCAGCCACCGCCTCCACACACTGCTCCCGGCCGTCGGCCTGCAGGTGCTTGGACACCACCGCCCCGAAGGCGATCAAACTGGCAATGCGGCCCCAGTTGGCAGCAGTGTGAAAGAGTGGCTTTCAAAACGCAACACATTGCTAGGGACTGATAAGGGGAAGAGCAACTGCGTCCTGGCCATTTCCGAGAATGCTGCCGAGAGGGGGCCGGGTTGCAGTTTCTCAGAACTGCATCCTGTGGTTCAGGAGGTTAACGCATCCACACAGCCTCAGAGCGACAATTAGCACTGTGTCCGATTCACAGAGCCCGAGGATGCTTATGCACACCGCGATGGTGCGGATTCGGACCCCGGCCGAGTTCTAGAGAAATGGCACAGATGGCAAGACAACAGCTCCAGGGGGCAAAGTGTAGCTTACGAGATCAAAGACGCTCTTGTTAGCGACTGTAGGGGGTGGAAGCAGTGCGTAGGCGGCCGAAGCTCAGAGGTATCAGGTATTTTAATGGCAGTAGGTGTCTGGAATCCTACGCCTCCAGTGCGTTGAACCCTTTACACTCACCACCACACAAACACCACAAGGCGATCATGCATATAATGACTAACAATGATTGCTCAAACAGTGAACAGGAATAAAACTATACACTTCCTAAACCTTTTACTCCAGAGACTCAATACTCAAGCAAAAACCTAAATGATCACACGTATACaagagtttatttttacttgtgCAAGACTGCGGTTTCAGGTTTGGCAAAGACGCCTGAGAATCGAGAAGTGGCTCCACGGGTTCTCCGGTGTGCAACGGGGCAAATCTGAGTCAGACACGGAGGCAGGATTGGATTACTCCACCTTGGAAACCGACCCAGTGTGGGATTACTCAATCCCACAACGGCTATTGTACATTAGGGTTTCTGTGGGATTGATTCAAGGCCGAGTGAGTCACAATCACATAGCTCAGATTCCTGCATTACCCAAATTAGACCTTGAATGAGGCCCCTGATCATACATTAACCCCTTAAAAGGCTCAGATGTGGCGGTTTTGGTCTTCTATGAAGAATATTCTCGCTTCTAAGAAGGAGGAGGTGAAGTGACACCCGAGTCTAATGACGTCAAAAAAAGCCCATATCAGCAGACTTTCAACACTGATCTAGATATCGATGAGGCATGCTTGTGTAATCAAAAGAACAAAATCCCCATTGATGCACATCTTTCAACAACTGCATGCACAAAGGGGTTTgtcgattttattttttggtctaTCCCAGCTACTTTAAGCATCAGAATCCAAATACACCCACTGGATCATTGTGCATGAATGCAATGAATAAAACTAGTGTATTTTGGGTTGCTCTCCACCAGTGACAGATTCGCATCTTTGCACGACCTCTGGGGGGAACTGCAACCTGAATCTTCACAAATGCAAGATCTGGGAATAATGCAACAGAGCAAAACACAGCGATCAAGAGCAACAAGTGCATGACATGCAAGCCAGAACGCCTCGGTTTCTGGAATGGGCACACCCGTTTCAGCGCTGGGCGACATCAATGACATCTTTTGTTATATTCTCTCCATTGTTCCctttcaaaagcaaacaatgttTTGGCCCGAGGAATGAACCAGTAGGGCCATTCAACACATACCAAAAAACGGCCACACAGGGCTTAACAAACCCAGGAGATCAGAAACCCTGCCTTCTTTTCAgaggatacattttattttttggctgaCAGGTCTCTACCACAGCTGGACAGTTTGCTCCAGAAGGTTCGGGGCAATTCTGCAGCAATGCAAACCAGAGAGATCCAGGAACACACTAATCCCAGGTCCCAGTGATTCGCACCCCAGCTCTATTTGTATACAGCAGATCCACTTTGATGGATCCAGTCAAACAGGTTTGCCCCCATTTAGACTGGGTGGGAtatgtacatataaacaaaGCCCTTTTCCATGTGCACTTTACTGCTACTACAATTGGTGCAAAGGTGGCAGATCTGGGAGCCCATCTGCGCTGCGGAACAGGGCGACCCTCGCTTTTCTCACACAAAGCCCCGGATGTGACGCGCTTCCTTTGTGTGCATTACAGGGCGACCCCCACGTTGTTGCCCCCCCACTAGAATTGCCCTCTCAGTCCATTTCCCGAAAGGCCATCTGACCACACACCATCAGGAAAATCATCTAATCACTCCTCTCATCTCATCGCCTCCGCCAGCAGAGCAGCTCAACGCGGAAACTCCTATTCGAGGAAATAAAATACGGCATCAACACGTCATGGAAAAGAACCGAACCGCACTAAACACACAACACCTATTCATCTGCATGGGATCGTTTTTATGATTAATAAGAGAAATAGCAAACCATTCTctaaaaaacagttaaaatggCTACTGTACCACCAAGTCATTACACTAACACaatccatgtgtgtgtgtgagtataatCTGTGTGTATAATctaaatataggcctacattatAATCtgttgtgtgtatattatatacatgcacattatataggctagcctatacacacatacacacacacctgtacaacacttttttattattttatttttctaatccaTGTACAATATATACGAATAGATCGGTGGATACGCACGCAAAAGCGTTTTGTAATATGTGAAGAAAAAGTTAGGCCCAAATGCAAAGCCCCGACCTCTAGTTTATACCAGCGCCGCACAAGGAACACCGACATCGACTTACCGTTATACGCATACTGATGCTTCTCGATCACCGACTCCACCACCCGCGTAAGGGTGGCTAAAGCCTTGTTCCTGCCCCGTCCACAGCTGCGAGATAGTCCACAGTACATCCCCAAAAACCCGTGAATAAGTTCCCGTGTCTCCCGGTCCAGCTGCCCTGAGGACTCCGCGGTGAAGCCGTTCATATTCCCGCAGTCTGTGGTCGGCGTGTCGGGCGAGGAGGGCAGCGAGCCGTCGTCGTTGCTGCTCTCCGGGAAGCGCGTCTCCAAAGCCAGGCCTTTGAACGCCTTGCGGGGCTGCTTGGAGACCCGGGCGGCGACGGCGGCATCCACCTCGTCCACCCAGTTATCCAGCTCCTCCTCGGCGGGGTTTGGGGGCCTCAGCATCGGCGTCTCCACCGCCCCGGTCGGCGTCTCCAGCGAGTGCGCCCTGTATCCGTCCGGGGTGCCTCCATTTTGCGCGCTGGGGTAGCACAAATGCACCACCAGGTTGGCCGACGAGCGCTTAAAGGTTGAGGAGAGAGGATCCATCTTGTCTGGTACGGTGCTGGCTGTGGGTGCGAGAAAGTAAATGGTGCTAAATGCCTGTGTGCGGTAACTTATGCTGCTGTGACCCGTCTCTAAAGCGCTCTTTCCCCCAGTCAGGGCTTTATATGCGATCCGCCCATTCCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172261 lncRNA upstream 48092 18964534 ~ 18972066 (+) True G137031
TU172242 lncRNA upstream 86910 18932424 ~ 18933248 (+) True G137016
TU172232 lncRNA upstream 117287 18902512 ~ 18902871 (+) True G137007
TU172188 lncRNA upstream 366560 18615898 ~ 18653598 (+) True G136969
TU172189 lncRNA upstream 382220 18615898 ~ 18637938 (+) False G136969
TU172291 lncRNA downstream 25939 19051944 ~ 19053829 (+) False AMCG00012471
TU172311 lncRNA downstream 86765 19112770 ~ 19114862 (+) True G137074
TU172316 lncRNA downstream 99836 19125841 ~ 19126313 (+) True G137079
TU172318 lncRNA downstream 113120 19139125 ~ 19161143 (+) True G137080
TU172357 lncRNA downstream 208405 19234410 ~ 19236788 (+) True G137110
AMCG00012465 mRNA upstream 82680 18933584 ~ 18937478 (+) True AMCG00012465
AMCG00012464 mRNA upstream 95109 18915218 ~ 18925049 (+) True AMCG00012464
AMCG00012466 mRNA upstream 111424 18896414 ~ 18908734 (+) True AMCG00012466
AMCG00012458 mRNA upstream 467344 18545578 ~ 18552814 (+) True AMCG00012458
AMCG00012460 mRNA upstream 476972 18541417 ~ 18543186 (+) False AMCG00012460
AMCG00012471 mRNA downstream 21492 19047497 ~ 19053220 (+) True AMCG00012471
AMCG00012470 mRNA downstream 28635 19054640 ~ 19065913 (+) True AMCG00012470
AMCG00012474 mRNA downstream 74314 19100319 ~ 19109503 (+) True AMCG00012474
AMCG00012476 mRNA downstream 245305 19271310 ~ 19273160 (+) True AMCG00012476
AMCG00012479 mRNA downstream 251711 19277716 ~ 19294096 (+) True AMCG00012479
TU172158 other upstream 475668 18539545 ~ 18544490 (+) True AMCG00012460
TU172065 other upstream 631852 18385289 ~ 18388306 (+) True G136864
TU171980 other upstream 885777 18132407 ~ 18134381 (+) True AMCG00012439
TU171871 other upstream 1116348 17902832 ~ 17903810 (+) True G136720
TU171793 other upstream 1176237 17840933 ~ 17843921 (+) True G136658
TU172324 other downstream 143743 19169748 ~ 19174421 (+) True G137083
TU172360 other downstream 211684 19237689 ~ 19238958 (+) True G137111
TU172558 other downstream 788920 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 865162 19891167 ~ 19895599 (+) False G137265
TU172707 other downstream 1305076 20331081 ~ 20341446 (+) True AMCG00012516

Expression Profile