RNA id: TU172261


Basic Information

Item Value
RNA id TU172261
length 1307
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G137031
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18964534 ~ 18972066 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGTTTTTAAGGGGGAACAGTTCCGTTCTGTCGACGTCACGTCACGTCACGTCACGTCACTCACGTCATTGAAGCCGCCGTACGTGGTCTTGTAGAAATCGTCGTCTTCCTCGGCGTCCAGTAGCTTAGACATGCGGTTCCCCGCCGTCTTGCGAGGCGCCCTCGCCACGGCCAGCGTCATCTCTGCGTTTATAGCCTGGGCCGCGGAATCAAACACAGGCAGACTCTAACAAATGAAAGATGACAGCAAGCCAACTGTATTTTGGCACCTCGACCGCATctgcaaaatacaaagcataaatGAGGATCCAAACATTCCGGAACACCTGTGACTCTGCTGAAAAAGATGCCTTCGATAAGTGATGATGTACAGTGAAAATGaatgacatttcaaatgcaattgcCTAGTATTTGTAGATAAGagattgggggaaaaaaaagtcataatAACATCACCAATTTGTCTGCAAATgtatcaattttttttgttttgttttggtgacaGTAAAAATATGTCCAAGAGCTCCAATTCTGACCCAAATCTCAGGGCTCTCTCAGTGTGGGTGGCAAGAACCAGGGGAATCTCCCTCAAATTAAGTAGGCCAATTACCTGACGTGACTTGAATCTCtcaacacaagcacacacagacataccAAACATAATCAGTTACACATCGATGTCTTGCCTCTCTCTGTGACTAAGACACCCAGTTTCACAGCATTGCATCTTCAACTTAGGAGCAAGTTTAGGCATGTTAGTGAAAGAACAGGGCGGAGGGGAGCAGTGGAATGTCTCCGGCCTCCCTATGTTTGTGTACATGGTGTTCTTGACCCGGCACTCGGATTAAGAGGTCCAGCCAGGCTGACTAACACTCAGCCACGCTCCCGTCTCTCCCCCCCTTCTTACTGATTATGTAATGGCCCCATCCTGTCAGGGCTCCACAAACACAGGGATCTGCACGACTGTGAGACACGTCAGCTTCCTTTACTGTCGCCAGGGCAAGTCTCTGGGGAAGCTAATTCTATCCCTGTTCGCTTGGCTCTGTTTTATTGACCCTTTTCCAAACGTTTGCCCTGCTCAGTGTAGGATCTGTTGCCCGTCTGACATTGGCGTTGTTTGTGGCACAAGAAAAAGTCAAAGCCAAAGAGGGCTGTGGTGAAAACAAGTAAGGGGTGTatgatgtatgacctcacttactgtacttgcctgtgtaaattggaagttgtaaaatgtattatactttgaattgctttgtataatgtaaatttgaatttgtaatgtttgaggccttgtactgaactgtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172242 lncRNA upstream 31286 18932424 ~ 18933248 (+) True G137016
TU172232 lncRNA upstream 61663 18902512 ~ 18902871 (+) True G137007
TU172188 lncRNA upstream 310936 18615898 ~ 18653598 (+) True G136969
TU172189 lncRNA upstream 326596 18615898 ~ 18637938 (+) False G136969
TU172078 lncRNA upstream 489618 18473233 ~ 18474916 (+) True G136873
TU172255 lncRNA downstream 48092 19020158 ~ 19026005 (+) True G137027
TU172291 lncRNA downstream 79878 19051944 ~ 19053829 (+) False AMCG00012471
TU172311 lncRNA downstream 140704 19112770 ~ 19114862 (+) True G137074
TU172316 lncRNA downstream 153775 19125841 ~ 19126313 (+) True G137079
TU172318 lncRNA downstream 167059 19139125 ~ 19161143 (+) True G137080
AMCG00012465 mRNA upstream 27056 18933584 ~ 18937478 (+) True AMCG00012465
AMCG00012464 mRNA upstream 39485 18915218 ~ 18925049 (+) True AMCG00012464
AMCG00012466 mRNA upstream 55800 18896414 ~ 18908734 (+) True AMCG00012466
AMCG00012458 mRNA upstream 411720 18545578 ~ 18552814 (+) True AMCG00012458
AMCG00012460 mRNA upstream 421348 18541417 ~ 18543186 (+) False AMCG00012460
AMCG00012471 mRNA downstream 75431 19047497 ~ 19053220 (+) True AMCG00012471
AMCG00012470 mRNA downstream 82574 19054640 ~ 19065913 (+) True AMCG00012470
AMCG00012474 mRNA downstream 128253 19100319 ~ 19109503 (+) True AMCG00012474
AMCG00012476 mRNA downstream 299244 19271310 ~ 19273160 (+) True AMCG00012476
AMCG00012479 mRNA downstream 305650 19277716 ~ 19294096 (+) True AMCG00012479
TU172158 other upstream 420044 18539545 ~ 18544490 (+) True AMCG00012460
TU172065 other upstream 576228 18385289 ~ 18388306 (+) True G136864
TU171980 other upstream 830153 18132407 ~ 18134381 (+) True AMCG00012439
TU171871 other upstream 1060724 17902832 ~ 17903810 (+) True G136720
TU171793 other upstream 1120613 17840933 ~ 17843921 (+) True G136658
TU172324 other downstream 197682 19169748 ~ 19174421 (+) True G137083
TU172360 other downstream 265623 19237689 ~ 19238958 (+) True G137111
TU172558 other downstream 842859 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 919101 19891167 ~ 19895599 (+) False G137265
TU172707 other downstream 1359015 20331081 ~ 20341446 (+) True AMCG00012516

Expression Profile