RNA id: TU172311


Basic Information

Item Value
RNA id TU172311
length 2093
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G137074
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19112770 ~ 19114862 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGATCAGAGACCTAATGGAAAGGCGGGGGTAGGGGGATTTTAAATGTGACGGAGAGGCAGTTGTAACAGGACAGTGAATTGCTAGGCGATGCTCAAACCAGGGAGTGGAGAAAGTAAAGCCCTGAACTTAGAATCTGGTGTTCAAAGGTATAACAGTAACACCGAATCCCAGATGTAAGAGACTTAATGGGGGGCTTGCATGTTTGCTGCTATTGTAGATCTGGACATGGGAACTGAGAAAATGGCTCAGTGGCCTCAGGTCAATTACTACCAAACTATCTCCCCTGCCAGGCATCCATACATGCATCTCTTAATATGAAGCTTTGGCCAAGTTTAAGCAAATTCCTCCGCCAGTCTCCCAAATGAGATGACTGGACTTTTTTCCATTGACTCGGCTTGGCTCCGTTAAGCAGGATTTCTTACTGTCCATAATTTATGTTGGACAAGctgattatgataataatcataacaataataaagataatgaTAACAAAACAGTACATAAACCAGATAATAAGCACATTTATTGGTTTCTCGGGCTGATGTTgtatttcagaatatttaaaCGGGATTGTACACTGAAACaagctgtaattatatattcattacagtgtattttttgtttttgttctttgtgtatTGGACTAATCGAGATAATTTGCCCATTTCATTAGTCAAGTGGTTTTCCCTTTCCCAAGATGGAAAAGAAAGTCTGAAAGCTCCtagctggttttgttttgtacaaaaaaaagaaaagataaaaaaaatcctgttcaGGCCAAGCGTTACAATGAAACATATCTGTCTACCTCAAACGTGTGACATCTCACAGGCCACACTTTGCTAAACCAAAGATCAAAAACCAaatcatgcttttttcttttttgtttaaagacgCACATGCAGACAAAACTCCTGCTTCATTTCCAAAAAAGATGAAACCcgcaaaaaaaaatccaatcttACCCAAGGTCACATAACTGTGTGTTGGGGAAATCAGTCTTAGATTTCAGTTCAACCTGTTGACCAGATCTTAGTTTTGCTACTTTTGAATGATTTAAACTAAAAAGCAGGAATAAAATGACAATcctagaaaaagaaagacatgcaAATTCTTGTTTATAAGTTGATTTCCCCTTGAATACTGGGGCTGGAGAAggaaagacagaaaatacagaGGGGAAAGTGAGAAGTTAGACATTTTTCCAACTTTGAGACAAATAGtgttcatgttttgtaattaatatgaTTTGATTGGATTTTGATGTACAGATTCCACCACCCCATTACACAAAAAGATTCCCTCCAAAACAGGGATCAGACAAGAAAAACCTGCtgtgcgtgtgttttttttattctgtattttttcttctcaaataaTGAAGCACTGTTTCcactgaactgaactggaaagagagaggagacacaAACATGCCCTGAATGCAATGTAAAGAGTTTAATGAGGCAGGATGCATCATGGGATTTTGGAGGTGTCATTCCCATAAAGTGGTGAATAGCAATGTGGAAAACTGCTGAAGTGAAGAGCAGAACGGAAAGCCAAATTCTGGGCAAATAAGAGACTGGAGAATACAGGAGTGGAAATGATTCTTCCCTTGTATtgagtgttttctttatttgtttagttgtatCTTTGTATCTAGGGttgtaaagcaaaataatttgatctgtctgtctgtgtgtcacaaACAGTGTCTGGATTTCCAGGTGTTGGTGTTTCTTTTCTATCCTTCGACACCATTCTTGGGTTTTCTAAATCCAGTACAATGGTAAAAATGCCCCAGAAGTCCTTTCACCTCTGTCATCaattctctcctctctcctgttaTTTTCTATCTGTGTTGGACTCGTTTGAACTTTTAATGAATGTGGCTAAATAACCAAAGgctaataataagaataataaaataataataataatggtaactctttaaactttaaacGTTGTGGGACATTTTGTACTAAAAAAAttgtaagaaagaaagaaacaactaAATTTCTTCAAATACCTCATGATGTGAAATTGTTTGTCGTGATGTTGCactaaaactattaaaatgatCTGTAATTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172291 lncRNA upstream 58941 19051944 ~ 19053829 (+) False AMCG00012471
TU172255 lncRNA upstream 86765 19020158 ~ 19026005 (+) True G137027
TU172261 lncRNA upstream 140704 18964534 ~ 18972066 (+) True G137031
TU172242 lncRNA upstream 179522 18932424 ~ 18933248 (+) True G137016
TU172232 lncRNA upstream 209899 18902512 ~ 18902871 (+) True G137007
TU172316 lncRNA downstream 10979 19125841 ~ 19126313 (+) True G137079
TU172318 lncRNA downstream 24263 19139125 ~ 19161143 (+) True G137080
TU172357 lncRNA downstream 119548 19234410 ~ 19236788 (+) True G137110
TU172358 lncRNA downstream 119548 19234410 ~ 19235931 (+) False G137110
TU172388 lncRNA downstream 207144 19322006 ~ 19322259 (+) True G137130
AMCG00012474 mRNA upstream 3267 19100319 ~ 19109503 (+) True AMCG00012474
AMCG00012470 mRNA upstream 46857 19054640 ~ 19065913 (+) True AMCG00012470
AMCG00012471 mRNA upstream 59550 19047497 ~ 19053220 (+) True AMCG00012471
AMCG00012465 mRNA upstream 175292 18933584 ~ 18937478 (+) True AMCG00012465
AMCG00012464 mRNA upstream 187721 18915218 ~ 18925049 (+) True AMCG00012464
AMCG00012476 mRNA downstream 156448 19271310 ~ 19273160 (+) True AMCG00012476
AMCG00012479 mRNA downstream 162854 19277716 ~ 19294096 (+) True AMCG00012479
AMCG00012481 mRNA downstream 185951 19300813 ~ 19333427 (+) True AMCG00012481
AMCG00012480 mRNA downstream 219834 19334696 ~ 19350202 (+) False AMCG00012480
AMCG00012483 mRNA downstream 346429 19461291 ~ 19467495 (+) True AMCG00012483
TU172158 other upstream 568280 18539545 ~ 18544490 (+) True AMCG00012460
TU172065 other upstream 724464 18385289 ~ 18388306 (+) True G136864
TU171980 other upstream 978389 18132407 ~ 18134381 (+) True AMCG00012439
TU171871 other upstream 1208960 17902832 ~ 17903810 (+) True G136720
TU171793 other upstream 1268849 17840933 ~ 17843921 (+) True G136658
TU172324 other downstream 54886 19169748 ~ 19174421 (+) True G137083
TU172360 other downstream 122827 19237689 ~ 19238958 (+) True G137111
TU172558 other downstream 700063 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 776305 19891167 ~ 19895599 (+) False G137265
TU172707 other downstream 1216219 20331081 ~ 20341446 (+) True AMCG00012516

Expression Profile