RNA id: TU172316


Basic Information

Item Value
RNA id TU172316
length 473
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G137079
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19125841 ~ 19126313 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctgacccgtcgaggcatggactccactagacctctgaaggtgtgctgtggtatctggcaccaagacgttagcagcagatcctttaagtcctgtaagttgcgaggtggggcctccatggatcggacttgtttgtccagcacatcccacagatgctcgattggattgagatctggggaatttggaggccaagtcaacaccttgaactcgtgattcatcagaccaggccaccttcttccattgctccgtggtccagttctgatgctcacgtgcccattgtaggtgctttcggcagtggacaggggtcagcatgggcagcctgactggtctgcgctacgcagccccatacgcaacaaactgcgatgcactgtgtgttctgacacctttctatcagaaccagcatgaactttttcagcaatttgagctacagtagctcgtctgttggatcggaccacacaggccagccttcgctccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172311 lncRNA upstream 10979 19112770 ~ 19114862 (+) True G137074
TU172291 lncRNA upstream 72012 19051944 ~ 19053829 (+) False AMCG00012471
TU172255 lncRNA upstream 99836 19020158 ~ 19026005 (+) True G137027
TU172261 lncRNA upstream 153775 18964534 ~ 18972066 (+) True G137031
TU172242 lncRNA upstream 192593 18932424 ~ 18933248 (+) True G137016
TU172318 lncRNA downstream 12812 19139125 ~ 19161143 (+) True G137080
TU172357 lncRNA downstream 108097 19234410 ~ 19236788 (+) True G137110
TU172358 lncRNA downstream 108097 19234410 ~ 19235931 (+) False G137110
TU172388 lncRNA downstream 195693 19322006 ~ 19322259 (+) True G137130
TU172394 lncRNA downstream 206015 19332328 ~ 19349057 (+) True AMCG00012480
AMCG00012474 mRNA upstream 16338 19100319 ~ 19109503 (+) True AMCG00012474
AMCG00012470 mRNA upstream 59928 19054640 ~ 19065913 (+) True AMCG00012470
AMCG00012471 mRNA upstream 72621 19047497 ~ 19053220 (+) True AMCG00012471
AMCG00012465 mRNA upstream 188363 18933584 ~ 18937478 (+) True AMCG00012465
AMCG00012464 mRNA upstream 200792 18915218 ~ 18925049 (+) True AMCG00012464
AMCG00012476 mRNA downstream 144997 19271310 ~ 19273160 (+) True AMCG00012476
AMCG00012479 mRNA downstream 151403 19277716 ~ 19294096 (+) True AMCG00012479
AMCG00012481 mRNA downstream 174500 19300813 ~ 19333427 (+) True AMCG00012481
AMCG00012480 mRNA downstream 208383 19334696 ~ 19350202 (+) False AMCG00012480
AMCG00012483 mRNA downstream 334978 19461291 ~ 19467495 (+) True AMCG00012483
TU172158 other upstream 581351 18539545 ~ 18544490 (+) True AMCG00012460
TU172065 other upstream 737535 18385289 ~ 18388306 (+) True G136864
TU171980 other upstream 991460 18132407 ~ 18134381 (+) True AMCG00012439
TU171871 other upstream 1222031 17902832 ~ 17903810 (+) True G136720
TU171793 other upstream 1281920 17840933 ~ 17843921 (+) True G136658
TU172324 other downstream 43435 19169748 ~ 19174421 (+) True G137083
TU172360 other downstream 111376 19237689 ~ 19238958 (+) True G137111
TU172558 other downstream 688612 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 764854 19891167 ~ 19895599 (+) False G137265
TU172707 other downstream 1204768 20331081 ~ 20341446 (+) True AMCG00012516

Expression Profile