RNA id: TU172357


Basic Information

Item Value
RNA id TU172357
length 1380
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G137110
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19234410 ~ 19236788 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATCTGTcagttcacattttatttaggtAAAACAaagaactaaacaaaaacataaacaaaccacaaaaccaGGGAACCAAGTGAACATGACATTGTTGGCAGCAGTGCGTGCTTTAGTCACACCCTGTGGCGGGATAAACAGTGTAAGGGCCAAAAGACACACCCATCGATAACCACGCGCctgatacagaaaaaaatgccaACCTTAATACTGCCCAATCTATATTGTTCGCGACCTGCGCAAAACTCTGGTTTGCATTCCCAAGATGGttgcctttttctctctctctaggtaTAAGGGACTCTACTTATAAGTCTACTTAAGGGACTTATACTCTCAAGAGTATAAGGGAATAACCCTGAATACTAAAATCAGATCGATGATCTGTGAAAACAACTCCAAAGGATAATGTTAATGCTTTGTGGGTGTCTCTAAACTTCAAACTGCTGTGCACAAACACAGATTTTTCCTGCCTTCCAGGAGCAGTGTTAAAGCCTCCCGAGGACAAGAGATGAAAGCCAAGGTTCAAGGTGTGTCATGAAACTGCTGCAACTGGTGGGTGTTCCTGAACCTGGGGTCCTCAGAAACAACCTAGGGTAGTACCCAAAAATTGCCTGCACACACCCCCCACCTTGACTTGATGTCAACTCTTGGACCTATGCGTACTGAGGTATTTTGATCCCCACTCCGGCTTTTAATAAGATATAAGTGATGTTACCATCAAGATTGTTATTAATCCATTCACTTTTCTTCGGCTGGCTAAGAATAGGGGCTCCCTCCCTAGGCTGAAGAATTCTGGGAGCCCCAGTTCCAAACCAAAAAggccaccccccacctcccccaacagaaaaaaacagcacacatttgtaataaaaaaaaaaaaagtaaaatattggGCATGGGTTTTGATCTAGATTGGGTTAAAACATGGCACGACGGGCAGTTCTCTGTGGTCCATTCCTCTTCCgtgcctcctcctcttcctcctctctctctttgtagTTACATGATGGGGAAGCTGGCCAAGTTGGCGATGCCGCAGAAGTTGTTCCGGTTGCGTGCCATCAAGATGTAGCCCTTGTTGCCCCAATCCTCGCCCCAGCGTTCTTCACAATCCAGTACTTCTTGCCTTTTGGGGTCACGCCATAACCCACTGCCAGGACGGCATGGTTGATGTCGTCCTTGTTGCAGTTTTTGTCATAGTAGATGCCTTCTTGTAGAACTGGAAGCTATAGAGGGTGGCATCAATGCCCACGGACACTGGCCCCACCTTGGCCACAGCCGCCTGCAGGGCCCTCTCGTTACCCTCTGGGATCTCCCTGTAGTTCTTGCAGGTGGCCGCCTTGCCCGTCTTATTGTAGGCACACTGCTCATCCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172318 lncRNA upstream 73267 19139125 ~ 19161143 (+) True G137080
TU172316 lncRNA upstream 108097 19125841 ~ 19126313 (+) True G137079
TU172311 lncRNA upstream 119548 19112770 ~ 19114862 (+) True G137074
TU172291 lncRNA upstream 180581 19051944 ~ 19053829 (+) False AMCG00012471
TU172255 lncRNA upstream 208405 19020158 ~ 19026005 (+) True G137027
TU172388 lncRNA downstream 85218 19322006 ~ 19322259 (+) True G137130
TU172394 lncRNA downstream 95540 19332328 ~ 19349057 (+) True AMCG00012480
TU172414 lncRNA downstream 124556 19361344 ~ 19395753 (+) True G137144
TU172428 lncRNA downstream 186765 19423553 ~ 19425538 (+) True G137155
TU172454 lncRNA downstream 268095 19504883 ~ 19509198 (+) True G137177
AMCG00012474 mRNA upstream 124907 19100319 ~ 19109503 (+) True AMCG00012474
AMCG00012470 mRNA upstream 168497 19054640 ~ 19065913 (+) True AMCG00012470
AMCG00012471 mRNA upstream 181190 19047497 ~ 19053220 (+) True AMCG00012471
AMCG00012465 mRNA upstream 296932 18933584 ~ 18937478 (+) True AMCG00012465
AMCG00012464 mRNA upstream 309361 18915218 ~ 18925049 (+) True AMCG00012464
AMCG00012476 mRNA downstream 34522 19271310 ~ 19273160 (+) True AMCG00012476
AMCG00012479 mRNA downstream 40928 19277716 ~ 19294096 (+) True AMCG00012479
AMCG00012481 mRNA downstream 64025 19300813 ~ 19333427 (+) True AMCG00012481
AMCG00012480 mRNA downstream 97908 19334696 ~ 19350202 (+) False AMCG00012480
AMCG00012483 mRNA downstream 224503 19461291 ~ 19467495 (+) True AMCG00012483
TU172324 other upstream 59989 19169748 ~ 19174421 (+) True G137083
TU172158 other upstream 689920 18539545 ~ 18544490 (+) True AMCG00012460
TU172065 other upstream 846104 18385289 ~ 18388306 (+) True G136864
TU171980 other upstream 1100029 18132407 ~ 18134381 (+) True AMCG00012439
TU171871 other upstream 1330600 17902832 ~ 17903810 (+) True G136720
TU172360 other downstream 901 19237689 ~ 19238958 (+) True G137111
TU172558 other downstream 578137 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 654379 19891167 ~ 19895599 (+) False G137265
TU172707 other downstream 1094293 20331081 ~ 20341446 (+) True AMCG00012516
TU172848 other downstream 1194137 20430925 ~ 20440670 (+) False AMCG00012521

Expression Profile