RNA id: TU172388


Basic Information

Item Value
RNA id TU172388
length 254
lncRNA type intronic
GC content 0.49
exon number 1
gene id G137130
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19322006 ~ 19322259 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaacattatttttaagagtGATGTTTCAAGGgcttgtgtgagtgtgtgtggtagtttgtgtgtcagttttaTCTTGAGAGGGAATTGAAGGCGGGGCTGAGCTGGCACAGTTGAGGAAGctgaggtgtgtgtgagtgtgtctctgtatgtgtgaatgtgtgtgtgtgtgtgtctgtgtaagcCAATGtcctgtgtctctcagtgtcacTCTCCTGCAGGCAGTATGGGAGCCGCAACTCTGTGCGCTGTGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172357 lncRNA upstream 85218 19234410 ~ 19236788 (+) True G137110
TU172358 lncRNA upstream 86075 19234410 ~ 19235931 (+) False G137110
TU172318 lncRNA upstream 160863 19139125 ~ 19161143 (+) True G137080
TU172316 lncRNA upstream 195693 19125841 ~ 19126313 (+) True G137079
TU172311 lncRNA upstream 207144 19112770 ~ 19114862 (+) True G137074
TU172394 lncRNA downstream 10069 19332328 ~ 19349057 (+) True AMCG00012480
TU172414 lncRNA downstream 39085 19361344 ~ 19395753 (+) True G137144
TU172428 lncRNA downstream 101294 19423553 ~ 19425538 (+) True G137155
TU172454 lncRNA downstream 182624 19504883 ~ 19509198 (+) True G137177
TU172456 lncRNA downstream 182624 19504883 ~ 19508859 (+) False G137177
AMCG00012479 mRNA upstream 27910 19277716 ~ 19294096 (+) True AMCG00012479
AMCG00012476 mRNA upstream 48846 19271310 ~ 19273160 (+) True AMCG00012476
AMCG00012474 mRNA upstream 212503 19100319 ~ 19109503 (+) True AMCG00012474
AMCG00012470 mRNA upstream 256093 19054640 ~ 19065913 (+) True AMCG00012470
AMCG00012471 mRNA upstream 268786 19047497 ~ 19053220 (+) True AMCG00012471
AMCG00012480 mRNA downstream 12437 19334696 ~ 19350202 (+) False AMCG00012480
AMCG00012483 mRNA downstream 139032 19461291 ~ 19467495 (+) True AMCG00012483
AMCG00012484 mRNA downstream 154123 19476382 ~ 19483546 (+) True AMCG00012484
AMCG00012489 mRNA downstream 174188 19496447 ~ 19501256 (+) True AMCG00012489
AMCG00012487 mRNA downstream 196847 19519106 ~ 19523682 (+) True AMCG00012487
TU172360 other upstream 83048 19237689 ~ 19238958 (+) True G137111
TU172324 other upstream 147585 19169748 ~ 19174421 (+) True G137083
TU172158 other upstream 777516 18539545 ~ 18544490 (+) True AMCG00012460
TU172065 other upstream 933700 18385289 ~ 18388306 (+) True G136864
TU171980 other upstream 1187625 18132407 ~ 18134381 (+) True AMCG00012439
TU172558 other downstream 492666 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 568908 19891167 ~ 19895599 (+) False G137265
TU172707 other downstream 1008822 20331081 ~ 20341446 (+) True AMCG00012516
TU172848 other downstream 1108666 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other downstream 1108777 20431036 ~ 20440670 (+) False AMCG00012521

Expression Profile