RNA id: TU172414



Basic Information


Item Value
RNA id TU172414
length 270
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G137144
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19361344 ~ 19395753 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


caagaagaagcacattaaggtcctggagtggcctaacCAGTCTCCAGACCCTAATCCCAatgaaaatctgtggagggagctgagggttcgagttgccaaacgtcagcctcgaaaccttaatgacttggagaggatctgcaaagaggagtgggacaaaatccctcctgagatgtgtgcaaacctggtggccaactacaagaaacgtctgacctctgtgattgccaacaagggttttgccaccaagtactaagtcgaaggggccaaacaccc

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU172394 lncRNA upstream 12287 19332328 ~ 19349057 (+) True AMCG00012480
TU172388 lncRNA upstream 39085 19322006 ~ 19322259 (+) True G137130
TU172357 lncRNA upstream 124556 19234410 ~ 19236788 (+) True G137110
TU172358 lncRNA upstream 125413 19234410 ~ 19235931 (+) False G137110
TU172318 lncRNA upstream 200201 19139125 ~ 19161143 (+) True G137080
TU172428 lncRNA downstream 27800 19423553 ~ 19425538 (+) True G137155
TU172454 lncRNA downstream 109130 19504883 ~ 19509198 (+) True G137177
TU172456 lncRNA downstream 109130 19504883 ~ 19508859 (+) False G137177
TU172478 lncRNA downstream 263993 19659746 ~ 19689785 (+) True G137196
TU172544 lncRNA downstream 393234 19788987 ~ 19793532 (+) True G137242
AMCG00012480 mRNA upstream 11142 19334696 ~ 19350202 (+) False AMCG00012480
AMCG00012481 mRNA upstream 27917 19300813 ~ 19333427 (+) True AMCG00012481
AMCG00012479 mRNA upstream 67248 19277716 ~ 19294096 (+) True AMCG00012479
AMCG00012476 mRNA upstream 88184 19271310 ~ 19273160 (+) True AMCG00012476
AMCG00012474 mRNA upstream 251841 19100319 ~ 19109503 (+) True AMCG00012474
AMCG00012483 mRNA downstream 65538 19461291 ~ 19467495 (+) True AMCG00012483
AMCG00012484 mRNA downstream 80629 19476382 ~ 19483546 (+) True AMCG00012484
AMCG00012489 mRNA downstream 100694 19496447 ~ 19501256 (+) True AMCG00012489
AMCG00012487 mRNA downstream 123353 19519106 ~ 19523682 (+) True AMCG00012487
AMCG00012488 mRNA downstream 132719 19528472 ~ 19531808 (+) True AMCG00012488
TU172360 other upstream 122386 19237689 ~ 19238958 (+) True G137111
TU172324 other upstream 186923 19169748 ~ 19174421 (+) True G137083
TU172158 other upstream 816854 18539545 ~ 18544490 (+) True AMCG00012460
TU172065 other upstream 973038 18385289 ~ 18388306 (+) True G136864
TU171980 other upstream 1226963 18132407 ~ 18134381 (+) True AMCG00012439
TU172558 other downstream 419172 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 495414 19891167 ~ 19895599 (+) False G137265
TU172707 other downstream 935328 20331081 ~ 20341446 (+) True AMCG00012516
TU172848 other downstream 1035172 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other downstream 1035283 20431036 ~ 20440670 (+) False AMCG00012521

Expression Profile


TU172414 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
End of interactive chart.

TU172414 Expression in each Bioproject

Bar chart with 7 bars.
TU172414 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
End of interactive chart.