RNA id: TU172504


Basic Information

Item Value
RNA id TU172504
length 1569
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G137214
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19504884 ~ 19635067 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agtatatatatatatatatatatatatatatatatatatagagagagagagagagagagagagagagagagagagagagagcttgtgACATCATTGTAAGAGTGTAGATGTTataatggcaatgggccagacacattgcaaatGGAGCAGACCAACgctggacaaaagaagctattgaatggatcccaagagataaaaaaacaacctaaaagattaaataagatgATTAGATGGTTTAAGACACATAATATCGCCTAACTTGGTAGACTGTAATTCGAAACTGAATGTCTGATCACTTACTGTCTGCTGGGTTGCAATGTGCCAGGAAGCTGTTTCAGAAAATTGAAATCACAGAAACTGTACCAACAAATCTTGTTTGTATAAAATTGGCATTGcctttgttctttaaaaaaaacaggcagaaCAGTATGATTGTCCACCTATGATTGTCTTTAACTCTTCTAGTGCAACTCTATGGAAAAACGAAATCATTAAGAAAACAGAGCTTCACAAATCAgtacaaaatgtaacatttaatgtCAAACACTTCACCTTGAGTGTGACAGGCGACAGGAAACTCAATAATTGCCACAGGACATGTTTCACAGTAAATCTGTATGACAAATACTTGCAGTCAGATACAGGCGTGGGTGCAATACGCTGTCTTGCTGGTTGGTGGTGTGTGGTTTTTGGAATTCTAAATGTCGTAACAGATAATTTATTTGACCGCTAAATCAGTAACACATTTCAAAGGGCTAATAAATGAGAGAGTCTGATATCACTGACCACAACATTGGCCATGCTGCTGGTCCAAAGATTGTATGTTTCCAGGTTGCCCCACAAACTGACCCAAAGTGACTACCTGATGAATCTAACAGCTTCCTATCACAGTCTACAGTAATGAAACAGTGGCCGGCTCATTAATTCGAGTGGACATCTGCCTACAAACATCACTTGCTAAGCCGTCTCCGAATCACCCAAGAACACAACACTGCCGTTGTCACCCGAAAAGGACCTTGGCTTGCAGGTGTATGTCTGTTCTGGGGTAGTCTTTAGCTGTAGCACTCTTATTAACCATTGTGTTACTGCTTTAGTGGGGTGTCTGAAGgcagttgttttttctgtctggACCAGAAGAAGGCTGTGAAGAATTCCAACAGGACGGTTGGATGATGGTAGGATGGTAGTGTGTATCGAATACTACAGTTGTGTTTGAGTCTGTGGAGAGTGATTTTATACAGGTGGGGAGAACAAGTGGACGGTTTGTGTTCTTCAGagtagtgtttgtgtgtgtgtgtgtgtgtgtgtgtaggtatgCAGCTATGTAACATTGATCATCAAAACCCTGATCCATTCCCAGGTCAAGCATTGAGCGCCTTCTCGACCTCCTCGGTTTGGATAGCGGTCATCTCTTCATGACCCTGATCTTCCTCTGGCACCTGCagcaaaaagacaaaagaaaacagcCCAAAGGGAAAATGATCTCTGGATACTGCCCGGTGCTTTCCATCTGGCAACGGTGATCCACTCGAAAGCAACAGGGCCAGTTGTGTACTGGTTTGGGGCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172533 lncRNA downstream 4039 19617527 ~ 19622445 (-) True G137232
TU172507 lncRNA downstream 117286 19504884 ~ 19509198 (-) False G137214
TU172337 lncRNA downstream 445126 19179139 ~ 19181358 (-) True G137094
TU172243 lncRNA downstream 696343 18927379 ~ 18930141 (-) True AMCG00012467
TU172240 lncRNA downstream 700141 18925545 ~ 18926343 (-) True G137014
TU172553 lncRNA upstream 133061 19768128 ~ 19774086 (-) True G137248
TU172579 lncRNA upstream 265139 19900206 ~ 19900440 (-) True G137270
TU172738 lncRNA upstream 532008 20167075 ~ 20227959 (-) True G137384
TU172749 lncRNA upstream 566497 20201564 ~ 20201895 (-) True G137389
TU172751 lncRNA upstream 574500 20209567 ~ 20212312 (-) True G137390
AMCG00012494 mRNA downstream 36220 19586764 ~ 19590264 (-) True AMCG00012494
AMCG00012491 mRNA downstream 89379 19533480 ~ 19537105 (-) True AMCG00012491
AMCG00012490 mRNA downstream 108736 19510237 ~ 19517748 (-) True AMCG00012490
AMCG00012485 mRNA downstream 209208 19415947 ~ 19417276 (-) True AMCG00012485
AMCG00012482 mRNA downstream 303271 19300495 ~ 19323213 (-) True AMCG00012482
AMCG00012499 mRNA upstream 168559 19803626 ~ 19813830 (-) True AMCG00012499
AMCG00012498 mRNA upstream 193433 19828500 ~ 19830155 (-) True AMCG00012498
AMCG00012500 mRNA upstream 256076 19891143 ~ 19895768 (-) True AMCG00012500
AMCG00012503 mRNA upstream 268039 19903106 ~ 19906610 (-) True AMCG00012503
AMCG00012502 mRNA upstream 280745 19915812 ~ 19931090 (-) True AMCG00012502
TU172487 other downstream 119090 19441927 ~ 19507394 (-) True G137199
TU172290 other downstream 583035 19032603 ~ 19043449 (-) True AMCG00012472
TU172106 other downstream 1248187 18375330 ~ 18378297 (-) True G136900
TU172031 other downstream 1389228 18205375 ~ 18237256 (-) True G136837
TU171956 other downstream 1525857 18098180 ~ 18100627 (-) True AMCG00012437
TU172548 other upstream 79095 19714162 ~ 19793531 (-) True G137246
TU172550 other upstream 109268 19744335 ~ 19793531 (-) False G137246
TU172597 other upstream 269355 19904422 ~ 19910378 (-) False AMCG00012503
TU172771 other upstream 625935 20261002 ~ 20270864 (-) True G137408
TU173042 other upstream 1400096 21035163 ~ 21038431 (-) True G137608

Expression Profile