RNA id: TU172507


Basic Information

Item Value
RNA id TU172507
length 1333
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G137214
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19504884 ~ 19635067 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNTAAACCTAAACCTCCCCTCAACCTggtgacctttttgtttttgctgattaCATCAttgcgtcacccggtgtccatTTGGGCCAATTCCACTGCGTTTATCTGACCTCGGTTACAGGAGTTTGAATCTGACCCTCACACCAGGGTTTTCTCCAGGATCAGAGTGGGAGGATCTCGAAGTTAAAGGGGGCAGTTAGCCAAGACTGGATCTCGTGGGGTGTGACTTCACCTGTTGGCCTGTGCTGTAAATATTCTTGAGATGTATAGAGAACTGTACTGTGTGACTAGCTCCCCTCGCCAGCACTGCCACACTCCTTTAATAAAGTATTACCAATCAAGTGGGTGGGAGTGGAGGGCAAGACTGAGTGGGTCTCCCTCAGTTTAGTGGGTCAGTGATTTCCGGACCTCCGTTTATCCTCAAAGGTAGAAGTGGATGCTTTCTTCTCAGTACGGAGACTGCAGGGCATCGGTCAGTCCTGCCTTTTACTGAAGTAAGAGTCGCttcaaatacttaatttaattgaaaaacaaaaagttcagAGTGAGGTTCACTATACAAAATCCTAAGCTCGTGACAATGTTCCCTTTGGAAGGTGATGCCCATAGCGTCACTggtttacacacaaacatggaAACTGattgggtgggggtgggggaggggaggggaggctgGCAGACTGATCATTTGCAAAGTCACAGAGCAGCCCCCTAGTATCTGTGCTTCGGTGGAGATGCAACCAAGAAACAGGgcttcccaaccctggtcctgcaggaccccctaccctgctgtttttttttccaatcgtGCTCTCCgtttcttaattgaacccttttgatttattttactttgtaacGGATACAAATCTGGTTCCTTGATAAGGTAAGTtcattatacatgttttatacttaacttttAACCCCTATTGTTTACAATAAAGTCTCTGATTCAGGAAATTATTAGTATAATTAAGGGTTCAGTTAAGTatttgagagctcggttggaacaaaaaccagcagagtagggggtcctccaggagcaggtTTGGGGACCACTCTAGTTTAGCTGGCATCCCAACCCCCACATCAGAATGTTACAATTCATGGAATATATAAATCCACAATTCTAAATCAAGTTCTAATCTCCAGCACTCCAGACCAAACAATTACATAAGCATTCACCTGCTCTGTGCAAAAGATCACAAAAGATTGATGTTAAAGAATTTTGCCAATGTGACGCAACAGACCCTATAACCGAAATCAGtgggggatttttttatttttaaatcctggtGATGTATGActgatgtgaaataaaaaaaaactcttaaatCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172337 lncRNA downstream 323526 19179139 ~ 19181358 (-) True G137094
TU172243 lncRNA downstream 574743 18927379 ~ 18930141 (-) True AMCG00012467
TU172240 lncRNA downstream 578541 18925545 ~ 18926343 (-) True G137014
TU172233 lncRNA downstream 602046 18902473 ~ 18902838 (-) True G137008
TU172222 lncRNA downstream 717729 18786956 ~ 18787155 (-) True G136997
TU172533 lncRNA upstream 108329 19617527 ~ 19622445 (-) True G137232
TU172504 lncRNA upstream 117286 19626484 ~ 19635067 (-) True G137214
TU172553 lncRNA upstream 258930 19768128 ~ 19774086 (-) True G137248
TU172579 lncRNA upstream 391008 19900206 ~ 19900440 (-) True G137270
TU172738 lncRNA upstream 657877 20167075 ~ 20227959 (-) True G137384
AMCG00012485 mRNA downstream 87608 19415947 ~ 19417276 (-) True AMCG00012485
AMCG00012482 mRNA downstream 181671 19300495 ~ 19323213 (-) True AMCG00012482
AMCG00012477 mRNA downstream 253472 19207349 ~ 19251412 (-) True AMCG00012477
AMCG00012478 mRNA downstream 300142 19196597 ~ 19204742 (-) True AMCG00012478
AMCG00012475 mRNA downstream 384876 19116298 ~ 19120008 (-) True AMCG00012475
AMCG00012490 mRNA upstream 1039 19510237 ~ 19517748 (-) True AMCG00012490
AMCG00012491 mRNA upstream 24282 19533480 ~ 19537105 (-) True AMCG00012491
AMCG00012494 mRNA upstream 77566 19586764 ~ 19590264 (-) True AMCG00012494
AMCG00012499 mRNA upstream 294428 19803626 ~ 19813830 (-) True AMCG00012499
AMCG00012498 mRNA upstream 319302 19828500 ~ 19830155 (-) True AMCG00012498
TU172290 other downstream 461435 19032603 ~ 19043449 (-) True AMCG00012472
TU172106 other downstream 1126587 18375330 ~ 18378297 (-) True G136900
TU172031 other downstream 1267628 18205375 ~ 18237256 (-) True G136837
TU171956 other downstream 1404257 18098180 ~ 18100627 (-) True AMCG00012437
TU171826 other downstream 1733918 17768060 ~ 17770966 (-) False AMCG00012414
TU172548 other upstream 204964 19714162 ~ 19793531 (-) True G137246
TU172550 other upstream 235137 19744335 ~ 19793531 (-) False G137246
TU172597 other upstream 395224 19904422 ~ 19910378 (-) False AMCG00012503
TU172771 other upstream 751804 20261002 ~ 20270864 (-) True G137408
TU173042 other upstream 1525965 21035163 ~ 21038431 (-) True G137608

Expression Profile