RNA id: TU172553


Basic Information

Item Value
RNA id TU172553
length 606
lncRNA type inter_gene
GC content 0.58
exon number 2
gene id G137248
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19768128 ~ 19774086 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCACTGGCCGGTCTCTGTGGCAACCCCGGAGACACTGTGTTCCTCTGTAGCGCTGGTTGCTGGGGCGACAGGAGGCGGGGGTCCGAGAGCGACGACGTCACGAAGGAGGTGGTTACCAGGGTGCTGCCGGGGTTGCTGAACTGTAGTGCATTCTGATTGGACACCGGGACCGTGACGGGCATCGAGAAGGTGGTGGGCGGGACTCCGGgctgggagagaTGACAGTCTATAGCTCTGCATCATTTTATCAAACTCCTCGTCAATTTTTTTGTACTTCTCCTCAGTGCGGGGCGTGAGTGAGAAGGGCTCCGCGGGGTCTGGGCTCTCGCAGTCCCTGTGCTCTTTCTTGCTCAGAGCCTTGATTTGTGTTTGGAGAGAGGGGCCCacggaaagagagggagggagagagagagagagagagagagagagagagagagagggggttagCGAAGGTGTAGAGTGTGCTACTCACGCCATATCTCTTGAAAAGGATGTCCAGGTCCTCGTTGGTCTTGCGGAATTTGTCATCGTTCAGGGGGCTCTGGTCGATGGAGTCATCGCCGTCGGGCTCCGGACTGTCGCAGCCGTTGAAACCTTTCTTTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172504 lncRNA downstream 133061 19626484 ~ 19635067 (-) True G137214
TU172533 lncRNA downstream 145683 19617527 ~ 19622445 (-) True G137232
TU172507 lncRNA downstream 258930 19504884 ~ 19509198 (-) False G137214
TU172337 lncRNA downstream 586770 19179139 ~ 19181358 (-) True G137094
TU172243 lncRNA downstream 837987 18927379 ~ 18930141 (-) True AMCG00012467
TU172579 lncRNA upstream 126120 19900206 ~ 19900440 (-) True G137270
TU172738 lncRNA upstream 392989 20167075 ~ 20227959 (-) True G137384
TU172749 lncRNA upstream 427478 20201564 ~ 20201895 (-) True G137389
TU172751 lncRNA upstream 435481 20209567 ~ 20212312 (-) True G137390
TU172818 lncRNA upstream 602357 20376443 ~ 20377953 (-) True G137449
AMCG00012494 mRNA downstream 177864 19586764 ~ 19590264 (-) True AMCG00012494
AMCG00012491 mRNA downstream 231023 19533480 ~ 19537105 (-) True AMCG00012491
AMCG00012490 mRNA downstream 250380 19510237 ~ 19517748 (-) True AMCG00012490
AMCG00012485 mRNA downstream 350852 19415947 ~ 19417276 (-) True AMCG00012485
AMCG00012482 mRNA downstream 444915 19300495 ~ 19323213 (-) True AMCG00012482
AMCG00012499 mRNA upstream 29540 19803626 ~ 19813830 (-) True AMCG00012499
AMCG00012498 mRNA upstream 54414 19828500 ~ 19830155 (-) True AMCG00012498
AMCG00012500 mRNA upstream 117057 19891143 ~ 19895768 (-) True AMCG00012500
AMCG00012503 mRNA upstream 129020 19903106 ~ 19906610 (-) True AMCG00012503
AMCG00012502 mRNA upstream 141726 19915812 ~ 19931090 (-) True AMCG00012502
TU172487 other downstream 260734 19441927 ~ 19507394 (-) True G137199
TU172290 other downstream 724679 19032603 ~ 19043449 (-) True AMCG00012472
TU172106 other downstream 1389831 18375330 ~ 18378297 (-) True G136900
TU172031 other downstream 1530872 18205375 ~ 18237256 (-) True G136837
TU171956 other downstream 1667501 18098180 ~ 18100627 (-) True AMCG00012437
TU172597 other upstream 130336 19904422 ~ 19910378 (-) False AMCG00012503
TU172771 other upstream 486916 20261002 ~ 20270864 (-) True G137408
TU173042 other upstream 1261077 21035163 ~ 21038431 (-) True G137608
TU173044 other upstream 1266003 21040089 ~ 21042443 (-) True AMCG00012541
TU173202 other upstream 1659578 21433664 ~ 21618770 (-) True AMCG00012559

Expression Profile