RNA id: TU172579


Basic Information

Item Value
RNA id TU172579
length 235
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G137270
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19900206 ~ 19900440 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tacttttttccctcactgtattctcTCTCCACCCTCTTATGCTGTGGTGGTTTCCATTTTCTATAAACCTTTGTATGGGGGGGTGACATCCTCAATGCAGGTTCATTTTCCACGCTGCAAAGCCCTGTAAAGTATGTCCCTCTTTGTTTTTGgggctgttttgtgtgtgaaccataaatatatattgtaataaatcaaagatactccattaaaaaaacgaaacaattAGGAAAGA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172553 lncRNA downstream 126120 19768128 ~ 19774086 (-) True G137248
TU172504 lncRNA downstream 265139 19626484 ~ 19635067 (-) True G137214
TU172533 lncRNA downstream 277761 19617527 ~ 19622445 (-) True G137232
TU172507 lncRNA downstream 391008 19504884 ~ 19509198 (-) False G137214
TU172337 lncRNA downstream 718848 19179139 ~ 19181358 (-) True G137094
TU172738 lncRNA upstream 266635 20167075 ~ 20227959 (-) True G137384
TU172749 lncRNA upstream 301124 20201564 ~ 20201895 (-) True G137389
TU172751 lncRNA upstream 309127 20209567 ~ 20212312 (-) True G137390
TU172818 lncRNA upstream 476003 20376443 ~ 20377953 (-) True G137449
TU172844 lncRNA upstream 522947 20423387 ~ 20423680 (-) True G137472
AMCG00012500 mRNA downstream 4438 19891143 ~ 19895768 (-) True AMCG00012500
AMCG00012498 mRNA downstream 70051 19828500 ~ 19830155 (-) True AMCG00012498
AMCG00012499 mRNA downstream 86376 19803626 ~ 19813830 (-) True AMCG00012499
AMCG00012494 mRNA downstream 309942 19586764 ~ 19590264 (-) True AMCG00012494
AMCG00012491 mRNA downstream 363101 19533480 ~ 19537105 (-) True AMCG00012491
AMCG00012503 mRNA upstream 2666 19903106 ~ 19906610 (-) True AMCG00012503
AMCG00012502 mRNA upstream 15372 19915812 ~ 19931090 (-) True AMCG00012502
AMCG00012501 mRNA upstream 34419 19934859 ~ 19947563 (-) True AMCG00012501
AMCG00012505 mRNA upstream 126907 20027347 ~ 20033065 (-) True AMCG00012505
AMCG00012504 mRNA upstream 136495 20036935 ~ 20060267 (-) True AMCG00012504
TU172548 other downstream 106675 19714162 ~ 19793531 (-) True G137246
TU172550 other downstream 106675 19744335 ~ 19793531 (-) False G137246
TU172487 other downstream 392812 19441927 ~ 19507394 (-) True G137199
TU172290 other downstream 856757 19032603 ~ 19043449 (-) True AMCG00012472
TU172106 other downstream 1521909 18375330 ~ 18378297 (-) True G136900
TU172597 other upstream 3982 19904422 ~ 19910378 (-) False AMCG00012503
TU172771 other upstream 360562 20261002 ~ 20270864 (-) True G137408
TU173042 other upstream 1134723 21035163 ~ 21038431 (-) True G137608
TU173044 other upstream 1139649 21040089 ~ 21042443 (-) True AMCG00012541
TU173202 other upstream 1533224 21433664 ~ 21618770 (-) True AMCG00012559

Expression Profile