RNA id: TU172654


Basic Information

Item Value
RNA id TU172654
length 2697
lncRNA type sense_over
GC content 0.46
exon number 2
gene id G137332
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20165283 ~ 20228036 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGattttagaatatttattttcttgcaccCCAATATAATTTAACTCCCATTTTCtcacaaataaaaagtgtgaATATACAAAGAGATCACAGGAGGAAGGGGGGGCAGCCTTTACATTTGAGAATTTCCTTTCACAATTTTGAGCTGCACGTCCTAAGGATTAATACCACTTTTTGAATTTACACGtgtaatttatacatttgtcaTCGGTAGAAAACTGATTGTAGAAACCATCCTCGCCCTATCTATTCCACTTATTAAATTCTTAATATATGGTTTGCATACTGAAATACTTATAAAATGTATCCTAGGCAGAGCGAGACTGCAGTTATTCAAATACCTGTTTGGGAGGATTTGCATGTGAAACTCCCTATCcctcaatgtgtgtgtgtacacgcTTAGGTTTCTCTCTTTATCAACTATGCCACACTACTCCTATTGGGGGGGGATATTTGGCACTCCTAGGGGAGTTTTGGAGAGCTTGAACTGCAGGCAAGTCATACAGTTTTTCAGaatgcagcattttattttctgatccGTTTTACTTGTAAATGGATTATTCTTGACTGTTTGAGTGAGAAAGAGGCCAGAAACACAGAGCCCCCCTGACACCAGAGTACAGCAGCCGCACTCCACCAGCACAGGTCCACTCCTCCAGCTGTTCTACTGCGGAGTTGGGCTTCAGCCAGGTGTCTCCACTACCTCTTCCTAGACAACCCCCCCTGCCCATTCCCAGTACTTGAGATCTTCAATAATAACTAATCAATGCAACCTGACACTGGGCTGGTGCGGATCCTCTGGTAGCGATCACAGccgatgtgtgtgtgtgtgtgtctgtgcacaAGCACCTAGGCATGGGTGTGTTCAATttcttcaattttattttacattctttcCAAGTAGCAGCTTGCTTAGtcagacaggacaggacaggggaATTTTcccaataattatatttaattaagcagTTAAGAAGGGGTAGGGGGGCGGGGTGTTTGGCTACAGTGCTGTTCCACTTCCCCTGCACAGCCAGCAGGTGGAGGCATTGGCACTGATAACAGAGAGAAGCAAGGTGTAAGGTTGAACTGTACAAGACATTAGAACAACCCCATccaacacagtacagcacaatacacacaatTCCATCTCCAGTTCCACTGCGACAAACCCCGGGCACCCAGCAAGAGTGGCCAATGATGATAGATgggataaataaatatccaattaaattatttttagttcAGTTATAAATGTGTCAATCTAATTGTAACATCATAAAACCAAAAAAGGTCACAGGGTTTaatccaggaccagggctgggcaaccactgtactgtactgcactgcacatgaCATGATGGCCAAAACAAATCACCCCTGGGGTAATTCAAGAATTTGAATTGGTAGTTTGTTTGCAGCTCAGttggaataatacaaaaacaaaacggaaCAGAAGACCACAGGGTTAAGTCCCAGACCAGGGCTGGACAAtcagcactgtgctgtactacgCTGCCCCTGGTGGTCAGCCTGGAGACAGCAGAGGTGCACctgtgctctctctcctgcccgCAGTTCTGGGGTGGCCCTTGGCTTGGGGGTGAGGGGATGGGTCAGCCAGTCTGCCAGAAGGGGTTGTTGGGTCTATGCTACCACCCAGCGCCACCGCCACCCCCCAAGCCAATAAAAGTTCTATGAGACACAGAGGGGAGGTGGACCAAAATCCTACAAGACACTATGCCCCCATCCCCTCAGAGACCAGGgctccccctccaccccactGCTGCAGGACAGACAATGAGGAAGGTGGATTTAAAAGGGGGTTGACAACTggcaagggagagggaggggtgaAGGACAACACGGGAACCTCTGCTCAATCCTGCACCCCCCATTGCATTACACGGGTATGACAGTGTACATAGAACACagtataaaacaattaaaaaaaaaaaccatcatAAAAATAGCAACATCTGAACCACaccagtgacacacacacagacacactccaaAGCATACATCTgtacatgacacacacacacccactcaGATGTGTGCACACGTGCATACTGACATGgggcacacactcacacagacgcacacacagcaAATTAGATTAGCcactctttaaaacaaaacaacccccccaccccaccaaaaaaaaaaatatatagagctATAATCATGACAATAATGGTACACACGAGTCCAAGCAAATATACATCCATTGAGTAGCCCTGCCACGCTGTCAATTCGGTTCATCCGTCCCCTCACCCTCTGTGCTCTACCCTGGGctcgcccccccccaccccagactGGAGCAGACTGACAGGGAGGAGAAAAACCTTGCCGCTCTCTTCCCGGCGAGTGCCGTAGGCTGAGCCATGCGAGCGGAAAAACCCCTCTGATCACCCTCTGCCTCCCCCACCTCACCAAATCTAAAACACATTCAATACAACAACGGGAGAGGGAGGCGAGACTCCAAGCTTCATCTCTTAATATATACTCATATTCCTCTCCACAACCGTGTACAAACATACTAGCGTGCTTTTGAGTGAAgttacatgtatgtgtgtgtatatacacacatatacNNNNNNacacacacacacacagagcacaaatAATCACATCACGCATGCACTGCACATGTACCAACAGCACAAAAAGAAACCTGCACATATacaaaccacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172572 lncRNA upstream 269684 19891167 ~ 19895599 (+) True G137265
TU172544 lncRNA upstream 371751 19788987 ~ 19793532 (+) True G137242
TU172478 lncRNA upstream 475498 19659746 ~ 19689785 (+) True G137196
TU172454 lncRNA upstream 656085 19504883 ~ 19509198 (+) True G137177
TU172456 lncRNA upstream 656424 19504883 ~ 19508859 (+) False G137177
TU172681 lncRNA downstream 18615 20246651 ~ 20254434 (+) False AMCG00012512
TU172701 lncRNA downstream 93570 20321606 ~ 20328824 (+) True G137364
TU172823 lncRNA downstream 192094 20420130 ~ 20422556 (+) False AMCG00012522
TU172869 lncRNA downstream 261728 20489764 ~ 20493787 (+) True AMCG00012523
TU172871 lncRNA downstream 305716 20533752 ~ 20533959 (+) True G137494
AMCG00012511 mRNA upstream 30630 20133322 ~ 20134653 (+) True AMCG00012511
AMCG00012496 mRNA upstream 308580 19852153 ~ 19856703 (+) True AMCG00012496
AMCG00012497 mRNA upstream 339020 19817519 ~ 19826263 (+) True AMCG00012497
AMCG00012495 mRNA upstream 377641 19763003 ~ 19787642 (+) True AMCG00012495
AMCG00012492 mRNA upstream 537914 19617738 ~ 19627369 (+) True AMCG00012492
AMCG00012514 mRNA downstream 11798 20239834 ~ 20240031 (+) True AMCG00012514
AMCG00012512 mRNA downstream 26314 20254350 ~ 20270919 (+) True AMCG00012512
AMCG00012517 mRNA downstream 55213 20283249 ~ 20291367 (+) True AMCG00012517
AMCG00012518 mRNA downstream 72790 20300826 ~ 20327286 (+) True AMCG00012518
AMCG00012516 mRNA downstream 113336 20341372 ~ 20344646 (+) False AMCG00012516
TU172571 other upstream 269684 19891167 ~ 19895599 (+) False G137265
TU172558 other upstream 349666 19814925 ~ 19815617 (+) True G137252
TU172360 other upstream 926325 19237689 ~ 19238958 (+) True G137111
TU172324 other upstream 990862 19169748 ~ 19174421 (+) True G137083
TU172158 other upstream 1620793 18539545 ~ 18544490 (+) True AMCG00012460
TU172707 other downstream 103045 20331081 ~ 20341446 (+) True AMCG00012516
TU172848 other downstream 202889 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other downstream 203000 20431036 ~ 20440670 (+) False AMCG00012521
TU173010 other downstream 828659 21056695 ~ 21059263 (+) True G137583
TU173082 other downstream 985561 21213597 ~ 21219163 (+) True G137633

Expression Profile