RNA id: TU172738


Basic Information

Item Value
RNA id TU172738
length 758
lncRNA type sense_over
GC content 0.46
exon number 3
gene id G137384
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20167075 ~ 20227959 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctctgtgtgtgtgtgtgtNNNNNNgtatatgtgtgtatatacacacacatacatgtaacTTCACTCAAAAGCACGCTAGTATGTTTGTACACGGTTGTGGAGAGGAATATGAGTATATATTAAGAGATGAAGCTTGGAGTCTCGCCTCCCTCTCCCGTTGTTGTATTGAATGTGTTTTAGATTTGGTGAGGTGGGGGAGGCAGAGGGTGATCAGAGGGGTTTTTCCGCTCGCATGGCTCAGCCTACGGCACTCGCCGGGAAGAGAGCGGCAAGGGTGAGGGGACGGATGAACCGAATTGACAGCGTGGCAGGGCTACTCAATGGATGTATATTTGCTTGGACTCGTGTGTACCATTATTGTCATGATTATagctctatatatttttttttttggtggggtgggggggttgttttgttttaaagagtgGCTAATCTAATTtgctgtgtgtgcgtctgtgtgagtgtgtgcccCATGTCAGTATGCACGTGTGCACACATCtgagtgggtgtgtgtgtgtcatgtacAGATGTATGCTttggagtgtgtctgtgtgtgtgtcactggtGTGGTTCAGATGTTGCTATTTTTatgatggtttttttttttaattgttttatactGTGTTCTATGTACACTGTCATACCCGTGTAATGCAATGGGGGGTGCAGGATTGAGCAGAGGTTCCCGTGTTGTCCTtcacccctccctctcccttgccAGTTGTCAACCCCCTTTTAAATCCACCTTCCTCATTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172579 lncRNA downstream 266635 19900206 ~ 19900440 (-) True G137270
TU172553 lncRNA downstream 392989 19768128 ~ 19774086 (-) True G137248
TU172504 lncRNA downstream 532008 19626484 ~ 19635067 (-) True G137214
TU172533 lncRNA downstream 544630 19617527 ~ 19622445 (-) True G137232
TU172507 lncRNA downstream 657877 19504884 ~ 19509198 (-) False G137214
TU172818 lncRNA upstream 148484 20376443 ~ 20377953 (-) True G137449
TU172844 lncRNA upstream 195428 20423387 ~ 20423680 (-) True G137472
TU172872 lncRNA upstream 308989 20536948 ~ 20537194 (-) True G137495
TU172901 lncRNA upstream 314806 20542765 ~ 20552145 (-) True G137518
TU172899 lncRNA upstream 341859 20569818 ~ 20577843 (-) True G137517
AMCG00012508 mRNA downstream 9863 20147777 ~ 20157212 (-) True AMCG00012508
AMCG00012509 mRNA downstream 48510 20113894 ~ 20118565 (-) True AMCG00012509
AMCG00012510 mRNA downstream 53939 20108162 ~ 20113136 (-) True AMCG00012510
AMCG00012506 mRNA downstream 59827 20103314 ~ 20107248 (-) True AMCG00012506
AMCG00012504 mRNA downstream 106808 20036935 ~ 20060267 (-) True AMCG00012504
AMCG00012520 mRNA upstream 64771 20292730 ~ 20297061 (-) True AMCG00012520
AMCG00012524 mRNA upstream 475470 20703429 ~ 20742998 (-) True AMCG00012524
AMCG00012526 mRNA upstream 604982 20832941 ~ 20834492 (-) True AMCG00012526
AMCG00012528 mRNA upstream 630766 20858725 ~ 20859203 (-) True AMCG00012528
AMCG00012527 mRNA upstream 631306 20859265 ~ 20862618 (-) True AMCG00012527
TU172597 other downstream 256697 19904422 ~ 19910378 (-) False AMCG00012503
TU172548 other downstream 373544 19714162 ~ 19793531 (-) True G137246
TU172550 other downstream 373544 19744335 ~ 19793531 (-) False G137246
TU172487 other downstream 659681 19441927 ~ 19507394 (-) True G137199
TU172290 other downstream 1123626 19032603 ~ 19043449 (-) True AMCG00012472
TU172771 other upstream 33043 20261002 ~ 20270864 (-) True G137408
TU173042 other upstream 807204 21035163 ~ 21038431 (-) True G137608
TU173044 other upstream 812130 21040089 ~ 21042443 (-) True AMCG00012541
TU173202 other upstream 1205705 21433664 ~ 21618770 (-) True AMCG00012559
TU173211 other upstream 1268720 21496679 ~ 21502199 (-) True AMCG00012556

Expression Profile