RNA id: TU172871


Basic Information

Item Value
RNA id TU172871
length 208
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G137494
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20533752 ~ 20533959 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gGAGATAGTTGAAGCTTTTTATCTTCAAATTTGGCTCATCTCTGCTTGCAGTTCTCAGAGAAAGCTGCATAAACAGTGAAGCAAGTACAGGtgaggtgtgtgttttattatgtttcaaatattttacagtggaGACCGCTTATAGCGATCATGGTTATATTGATCAACCGCTTATATGAATCAAAAAGCTTGGGACGGAATCGTTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172869 lncRNA upstream 39965 20489764 ~ 20493787 (+) True AMCG00012523
TU172823 lncRNA upstream 111196 20420130 ~ 20422556 (+) False AMCG00012522
TU172701 lncRNA upstream 204928 20321606 ~ 20328824 (+) True G137364
TU172681 lncRNA upstream 279318 20246651 ~ 20254434 (+) False AMCG00012512
TU172660 lncRNA upstream 295879 20177081 ~ 20237873 (+) False G137337
TU172927 lncRNA downstream 223071 20757030 ~ 20757264 (+) True G137539
TU172996 lncRNA downstream 468009 21001968 ~ 21039749 (+) False AMCG00012539
TU173083 lncRNA downstream 686240 21220199 ~ 21221044 (+) True G137634
TU173078 lncRNA downstream 698021 21231980 ~ 21267912 (+) True G137631
TU173094 lncRNA downstream 711704 21245663 ~ 21252995 (+) False AMCG00012546
AMCG00012523 mRNA upstream 40093 20481114 ~ 20493659 (+) False AMCG00012523
AMCG00012521 mRNA upstream 88465 20430995 ~ 20445287 (+) True AMCG00012521
AMCG00012522 mRNA upstream 112120 20401009 ~ 20421632 (+) True AMCG00012522
AMCG00012519 mRNA upstream 147996 20372680 ~ 20385756 (+) True AMCG00012519
AMCG00012515 mRNA upstream 180473 20348607 ~ 20353279 (+) True AMCG00012515
AMCG00012525 mRNA downstream 250660 20784619 ~ 20788119 (+) True AMCG00012525
AMCG00012532 mRNA downstream 285291 20819250 ~ 20829362 (+) True AMCG00012532
AMCG00012536 mRNA downstream 299912 20833871 ~ 20839466 (+) True AMCG00012536
AMCG00012530 mRNA downstream 309845 20843804 ~ 20847235 (+) True AMCG00012530
AMCG00012534 mRNA downstream 372097 20906056 ~ 20916631 (+) True AMCG00012534
TU172848 other upstream 93082 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other upstream 93082 20431036 ~ 20440670 (+) False AMCG00012521
TU172707 other upstream 192306 20331081 ~ 20341446 (+) True AMCG00012516
TU172571 other upstream 638153 19891167 ~ 19895599 (+) False G137265
TU172558 other upstream 718135 19814925 ~ 19815617 (+) True G137252
TU173010 other downstream 522736 21056695 ~ 21059263 (+) True G137583
TU173082 other downstream 679638 21213597 ~ 21219163 (+) True G137633
TU173085 other downstream 690782 21224741 ~ 21230836 (+) True G137636
TU173067 other downstream 736401 21270360 ~ 21332070 (+) False G137629
TU173071 other downstream 736401 21270360 ~ 21276736 (+) True G137629

Expression Profile