RNA id: TU172872



Basic Information


Item Value
RNA id TU172872
length 247
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G137495
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20536948 ~ 20537194 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


catctggaaagtattcacagcgcttcactttttccacattttgttatgttacagccttattccaaaatggattaaattcattattttcctcaaaattctacaaacaataccccataatgacaacgtgaaagaagtttgtttgaaatctttgcaaatttattaaaaaaaaaaaaaaaaaaaaaaatgtacataagtattcacagcctttgacatgacactcaaaattgagctcaggtgcattcTGTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU172844 lncRNA downstream 113268 20423387 ~ 20423680 (-) True G137472
TU172818 lncRNA downstream 158995 20376443 ~ 20377953 (-) True G137449
TU172738 lncRNA downstream 308989 20167075 ~ 20227959 (-) True G137384
TU172751 lncRNA downstream 324636 20209567 ~ 20212312 (-) True G137390
TU172749 lncRNA downstream 335053 20201564 ~ 20201895 (-) True G137389
TU172901 lncRNA upstream 5571 20542765 ~ 20552145 (-) True G137518
TU172899 lncRNA upstream 32624 20569818 ~ 20577843 (-) True G137517
TU172957 lncRNA upstream 282131 20819325 ~ 20829367 (-) True G137558
TU172975 lncRNA upstream 295805 20832999 ~ 20916282 (-) True G137559
TU173023 lncRNA upstream 414744 20951938 ~ 20956378 (-) True G137591
AMCG00012520 mRNA downstream 239887 20292730 ~ 20297061 (-) True AMCG00012520
AMCG00012507 mRNA downstream 357984 20168155 ~ 20178964 (-) True AMCG00012507
AMCG00012508 mRNA downstream 379736 20147777 ~ 20157212 (-) True AMCG00012508
AMCG00012509 mRNA downstream 418383 20113894 ~ 20118565 (-) True AMCG00012509
AMCG00012510 mRNA downstream 423812 20108162 ~ 20113136 (-) True AMCG00012510
AMCG00012524 mRNA upstream 166235 20703429 ~ 20742998 (-) True AMCG00012524
AMCG00012526 mRNA upstream 295747 20832941 ~ 20834492 (-) True AMCG00012526
AMCG00012528 mRNA upstream 321531 20858725 ~ 20859203 (-) True AMCG00012528
AMCG00012527 mRNA upstream 322071 20859265 ~ 20862618 (-) True AMCG00012527
AMCG00012537 mRNA upstream 364530 20901724 ~ 20905761 (-) True AMCG00012537
TU172771 other downstream 266084 20261002 ~ 20270864 (-) True G137408
TU172597 other downstream 626570 19904422 ~ 19910378 (-) False AMCG00012503
TU172548 other downstream 743417 19714162 ~ 19793531 (-) True G137246
TU172550 other downstream 743417 19744335 ~ 19793531 (-) False G137246
TU172487 other downstream 1029554 19441927 ~ 19507394 (-) True G137199
TU173042 other upstream 497969 21035163 ~ 21038431 (-) True G137608
TU173044 other upstream 502895 21040089 ~ 21042443 (-) True AMCG00012541
TU173202 other upstream 896470 21433664 ~ 21618770 (-) True AMCG00012559
TU173211 other upstream 959485 21496679 ~ 21502199 (-) True AMCG00012556
TU173345 other upstream 1540979 22078173 ~ 22088469 (-) True AMCG00012564

Expression Profile