RNA id: TU173023


Basic Information

Item Value
RNA id TU173023
length 3250
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G137591
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20951938 ~ 20956378 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCTTTATTCattaaaagcacaattaaaaattTGATAAGATCTGAACCAAAACCTAAAATGTTCACAACATTCACACTTGAAACATTCTccaaaaatatgacaaaacgcagcaacttttaaaaccatttaatataCCAAAttgtatacaaaattaaaccatCACATCTGATGTGGATCATTCAGAGAGGACtgtacacaaaaaacacaaaacattttattgttgcagGTGTTGCGTtttacctttaaaacaaaacaaggactCCCGGTTAGTCTACCTGAGATGAACGGCAGCTGCAATGACAACAGCTGTAGACACCGGCCAGAGTCAACTCTTCAGGTTGTTCAGAACTTCATTATAGAGGCTGGGGCTAAAGGGCCTCTCTCACTTAGCTGTTAAAATCAGTATTGACCCGTTACATTTACACTGTATAGTGTTTTCAAGGTGAGACAACAGGACATTTGCGCTTAAAtcaagatatatataaaaaaaaaaaaaacgggaataaaattaggaaaaaaaaaagcttcgaCATTATACACtatccaaaacaaaacctaaaccACTGCCTTCTGCCGTCTTCCATCCGGAAGCCCCAGTCCGCAGCTTGGTTCTCTGCACTGTGGGGCTCAGCGGCGCCTCCTGTCTGGGCTCCTGCTCCGTCTCCTCCCACCCCTACAAGACCGGGAAATACAGGACAAATTCCAAATGAAAATGGAGCAATATTGCACTCTTCTACAGTGTGAGGAAGTGACAATGCAATTTTCCTTAACCAACGCATTCTGGCTTATTGtgaacaagcaaaataaattggGAAACTAAACAACACTTTAAAGCAGGAGCTGAACGCTGATAAATCGAGATTCTCTCCAGGCATACGCAATCAGCCTTGTGTTACTAAAAGACTGATTCCAGTGCTGAGAAGATCAACAATTCACACTATTTATTAATAGGCATTAGCAATGCATAATAGAAAGAATGGCCAAAAATTTAATCCCCTTTCCTGATTGCATTGTATAATATGATGCCAGTGTGATTTACTTAAATAAGACATTTCAAAGCCATCATATCAGACTAACTGCAGTTTAAGAACAACAGTGTTGACCCGCTTGCAGACCGATCTATAGAAATAAGACCAATACACCACCAAGCTGGGGCCTGGGACAGCTACTGACCTCCTCTTGCTCTTGGGCGGCCCTCGTACGAAGCCCCAGTCCACACTGATTGGCTGACCCATGAGATCTTGACCGTTTAACCCTTCCATAGCAGCCTGGGCCTCTTTGTAGGTCTCGTACTCTACCAGCGCATAACCTTCAGGTAGCCTGTCCTCCGGTCCAAGTTCAGATGCAGATTCTTGATTTCTCCGAACTCTGCAAACTTGTCGTGGATGTCCTCTTCGGTGGCTTCCTCGTGCACGCCCGTGACAAACAGGATCCAGCCCTCCACCGCTGTGAAGCAGACAGATCAGCTTAACATTGGAAACTGAGCAGTACAGCTGTGCTTACATGTTGAGAAGTCATGGACAAGGcaggtaaaataaatgaaatctcACATCTCTGTGGGCCTGGCTCGTCCCCATCCTGCTCTACTGTGTCATAGTCCTCCCGCACCCTGGAGCGCGCACCTTCCTCTGTGGCACAGAAACAGTGTTAGTTTACCTTCACCAACAACAAAGCAGGTCTCAGACACTCACGAAGGCCAGGTCAGTTCAGGGCCGGAGTGAGGTCTTCCTAATCATCCAGGGGATTCAAAACAGCACGCTACACCTTCAGACTGCACATAAACGCTACAATTACAGGAAACATAAGGAAGTAGTCTACAATTTTCACAAAGGAATATacaatgaaagcaaaaaatactggaacagaggagactacgtggatgacttgattcaagtcttcaaaatcatgaagggcatcgaccacatcaaaccagaggagcttttccagatcagcagggacatacggacccagggacacaaatggaaattgggcttcaaggcattcaagactgaaaacaggagacacttcttcacacagagaggcatcacaatctgaacaaaatccccagcgatgtggcagAAAagaatttgggaacattcaaaaatagactggagaggatccttggatcactcagttattaatggacaccaaacaagcacgatgggttgaatgggctcctctcgtttgtaaactctGTTTCCTACTATTAAGTACAAGTAAACTGAAACACTATTCATCACCACCCTGAAGTGATCTTAAAGCCCACACATAAAGCTTTTACTCCATGACTGGATAGTTTGTTCAACCACCCCATCATTAATTTTCATACGAGCCACTTGTTCCAAATATGAATTTCCACTTGAGCCCTCGTCCTGTTTTCAGTGTTGTGTGCGTAGTAGCCCAATTTCCCCCCCATTTATTTAGTTATCAACCCCCTTCTGGATGACATCTAGTGTGTTCAAGACCGAAGAGGTCAGTTCCTTCAGTCTGTACAAGCACATATAGACCAGATAACCTGTTGTGCACGGATTCCTCACGTCAGCACTTTAAAGCCTCACTACAAAGATATATCCTACAATCCAACAATACTAATTACATTAAGTTGGTATAAAACAAACTCACCGGATCCAAAGCCTCGTCCTTTCCGCCTCTTCGCCTTCTCCTTCAGCTTGTGGATGCTTTCTGTGGGAGGATGTAGACAGGATACAACGCATGGGAGTGTTAACGTTATATCTCAATGAGACGAGCTGAGATCAGACCGTTAAAACATGAATTATCAATCATCGACTCATATTTCCAAAAACCCCAACGTCAAATACTTCCAGAAAAAAGTTTAAAGGTAAATGCGTCTTATTTAAACGATTCATTCAACTGTGAGAATTGAATTACTGTTAAACACAGTTTTGGATGTGTGGTAGATAGACCACTGCGTTTACAAATTGGAATAAATAACTACTGTTAGACATGAAGCGGTATTAATAATGTGATGGACTGGAAACGGGTATAAGTTGAttcaaaattacattcaaaCTAAAGCAGGAGGGGCATTGAGGCCCTCGGCGAAGGCCGcgttttatattttacaaacgCTAGTTAACAACACGCTGCTCTAAAGAACCACAATCTCCGACTAAAGCGCCTAACTGCCTCcgatatgtatttaaattttacCATCACCATCCTCATCCATAGGAAAATCCTCGCCCCCCGCTTCGTGTAGGTCCAGCACGTCCGCCATCTTGTCCGcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172975 lncRNA downstream 35656 20832999 ~ 20916282 (-) True G137559
TU172957 lncRNA downstream 122571 20819325 ~ 20829367 (-) True G137558
TU172899 lncRNA downstream 374095 20569818 ~ 20577843 (-) True G137517
TU172901 lncRNA downstream 399793 20542765 ~ 20552145 (-) True G137518
TU172872 lncRNA downstream 414744 20536948 ~ 20537194 (-) True G137495
TU173039 lncRNA upstream 73714 21030092 ~ 21093996 (-) True G137605
TU173034 lncRNA upstream 78152 21034530 ~ 21039767 (-) True G137601
TU173054 lncRNA upstream 140544 21096922 ~ 21097296 (-) True G137619
TU173063 lncRNA upstream 210080 21166458 ~ 21169358 (-) True G137628
TU173181 lncRNA upstream 347094 21303472 ~ 21306761 (-) True G137699
AMCG00012537 mRNA downstream 46177 20901724 ~ 20905761 (-) True AMCG00012537
AMCG00012527 mRNA downstream 89320 20859265 ~ 20862618 (-) True AMCG00012527
AMCG00012528 mRNA downstream 92735 20858725 ~ 20859203 (-) True AMCG00012528
AMCG00012526 mRNA downstream 117446 20832941 ~ 20834492 (-) True AMCG00012526
AMCG00012524 mRNA downstream 208940 20703429 ~ 20742998 (-) True AMCG00012524
AMCG00012541 mRNA upstream 83740 21040118 ~ 21042443 (-) False AMCG00012541
AMCG00012545 mRNA upstream 163738 21120116 ~ 21121378 (-) True AMCG00012545
AMCG00012548 mRNA upstream 231799 21188177 ~ 21212016 (-) True AMCG00012548
AMCG00012547 mRNA upstream 268363 21224741 ~ 21230841 (-) True AMCG00012547
AMCG00012552 mRNA upstream 313362 21269740 ~ 21274408 (-) True AMCG00012552
TU172771 other downstream 681074 20261002 ~ 20270864 (-) True G137408
TU172597 other downstream 1041560 19904422 ~ 19910378 (-) False AMCG00012503
TU172548 other downstream 1158407 19714162 ~ 19793531 (-) True G137246
TU172550 other downstream 1158407 19744335 ~ 19793531 (-) False G137246
TU172487 other downstream 1444544 19441927 ~ 19507394 (-) True G137199
TU173042 other upstream 78785 21035163 ~ 21038431 (-) True G137608
TU173044 other upstream 83711 21040089 ~ 21042443 (-) True AMCG00012541
TU173202 other upstream 477286 21433664 ~ 21618770 (-) True AMCG00012559
TU173211 other upstream 540301 21496679 ~ 21502199 (-) True AMCG00012556
TU173345 other upstream 1121795 22078173 ~ 22088469 (-) True AMCG00012564

Expression Profile