RNA id: TU173042


Basic Information

Item Value
RNA id TU173042
length 3188
RNA type TUCP
GC content 0.45
exon number 2
gene id G137608
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 21035163 ~ 21038431 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNtatatatatatatatatatatatatatatataggcttgGTACCTTTCAGCATGTATTCCTGCTGTGCCTGCCTGCCTCTAAAGTTTGTAATTCGCATGTCCATCTGACAGATTTAGTCAGAATCCCCTTTACACTATGATCAGCGGAGAGactggtcagtcagtgtgccattCTTCTACTGCAAAGAAAGTTGTTGAGAGCAAATCTTGTTATCTGAGCTTTCAagcttgtttaaattaataaatacagctgtTGGGCAATAGCAAGCCTATGTATGTTACATGAAGGCACACAACAATTTCCATACAACACAAGAGAGAAAATGACACAGTCTGAGTGAATTCCAGTATAAAAAGGTGAGATGAAAAACTAAATCCATCCATGCAATGATGCAGGTAGTTATAATCGGACcgtgtgtgttttcagtatgAAAACACGTCATATACACACAAGGACTTCAACAACACGACTACCCTCAATTGGTCAATGCTTTAAGTGCATTCCCCGTCCTCTCATAGCAAAACTGAGAGATGATCGCATTAACCAAATGCTTATTATTACAAAACTTCCCAGGTCCTGGTATTATAAAGACTATGAAAGTAAGGAAAAGGGTAACACTTAAAGATGGTACCGtccaaacacaaatgtataaataaaacaaacatgtcgATGTTCATTGCAGCAAACCACCTGTAGGATAATCATATTCATCTTCAGGTGTCCAGAAGCAGACCTTGGAGATGAATCAAAGGAAATCTggtctgattaaacaaaaacaaaaaaacaaaaaaacaaaaaacagatttaaatcgTCTGAGCTAAGCAGGGTAATACTTTTTAGGTAAGTGCCTCTAATATTGTCCTGAAACAATTTGTTGGTCCAAACTAGCTTTTGGTTTTGGGTTGCTTTAGCATCTCAAGTTCCCCTCTTGTGCTGTAAGTTAAAGGTCTGCAGGTCAgcaatttaagaaaatactccCAGATTAGAAATAATTTTTCCCTATTCGAGTTCAGATTAGCATTACTAGTCTGTTTAGGGCTATTTCAATTCAAGAAGTAAAtgaagggagagaaggagaggactTTAACCCTATACCCctgaaactctctctctcttgcattGCACTGCGAgccaaaaacagaaataaaaaatccaaGTCTTTCTggatatctatctatctttttaGTTACTAATCTATAAGAACAGAACTCTGGAATCAGATAAAGAAAACGGCACATTAAGTTAATACTAAGAAGAAAATCGACTGTTTTTGTTAGAAATACTGCCTAGTAGCCCTTTAAGTGATACACTTTGAAATacaacttctttttttttctgtgacacCACAGTCTGACAAGAGCCTGCAtggaaaaatattacaaataagtaAGTTGTTAAGCGGCCAACAAATACTGAGCAGTTAGTACAGAGCTGGTTGCAGTTTTGGAATATGTTGCTTCCACACAAATACTTCAAAGCAGAACCCTTAAAAAGAGACAACTGCTTGCCAGCCTAAACACAAAGACATCAGCCGTTTGATAACGAATATAACTAGAGattatttctgaaaaatgtgcTCCATGGATAGACTGCTTTCTAAAAAGCCTTGCATCCGTAAACAAGCACCACTACTACAATGGAGTGCTGCCCTATTGTAAAGGGTCTCGGGTAGCGTACCAACACCCTTCAGTCAGGGACAGGACAATCTGCACCAACTGGCTTCATCGAAACCTTCATTTCAATAATTGTTTGCGAGAATGAACTTTTGTAAATTGGCGAGTGCATAAGAGATTGTGTGGAATGCAGACCAGCGGGACAGGCGTGTCCCAGGAACACGGCTGAGAAACACTGGTATTTAGTATATGAGCCACTGAAATAAAcgcctctccatctctccattttTCTATACTTCcttaattgcataattgaaTTGTGACGGTGAGCCAGTTAAGCCCCGGTTCACTGCCCAACATCGAGATCTAACTGGGAGAAATGTGACTGGCTACAATCcacaaacaacttttttttgtttgtttttttcagagtGCATCTCTGCTACAGCAATTCTTTGGTGCCTTTCAGTAGTGAGAACCGATCCCTCTGAACTCTCCTCGTGCAAGTACTGGTTTTCCCCTCAGTAAATCCTATGGTATCCTATGATACATGGTACCCATTACCAGTGAGTACCAGGATCAGGGTTTATAAGGACAGTAACGTACCACACCCCTGGTTTGACCAAGTCTTTACAGCCCACCAGGCATCTTCAAGGAGAGAGGCAGCGGCCGTCTTTACGAGCCCAGTGACGGGCCGCTGTTCTTGGACAGCCTGGCAGTGGGCGGGGGGCCGTAGCGCTGGTTTGAGACACCCGGGCCGCCATTGGCGTCGGGGGCGCGAGAGAAGAGGAAGGTGGTGTGCCGGGCACCCTGATTGAGATTGGCCTCGGGCTTCTTAGGCAGCCCCTCCAGAGGTCCATTGGTGGCTTTGCTGGGCCCATCCGAGACCTGGGCCAGCTTGTCTCCCAGCTGCTGCACCTCCAATGCCAGCTGCTGGACGGGGTGCTGAGGAGCAGGGTGGCACACCTGCAGGCATCAAAGATATACAAGAATGGGATTGGCATTTTCATTTATAGCCCCCCACTATGTGACACCTCTGTCGCTTAAAAGGAGTAACTGTACCTGTGTCTGCTGCCCCCCCCGCAGGTAGCAGCCCCTCCACACCCCCACACAAGGCCCCAGTAAGAGGGGCAGCAGTGGGCCCTGCGAGTCGAGATGCTCGGGGGGGACGGTGGCGGTCTTGGCCGATTCGGCGGGGGTCCACAGCTTCAGCAGGCGCTCCACGGCTGGCAGGCTctcggaggaggagggggctcGGCGGTGGCTCTTCCTCTGAGACCCCGACCCCCCGCCGCCGCGCCAGGGGATGAGATGAGAGGGGGAGGTCAGGCTGCCTCTGGAGAGCAGGAACACACAGCCCTGAGTGGCCGGGGCTGCGACACCAGcctgcggagagagagagagagagaaattaggGCTATGGGTGCACTTTCTGCTTCCCACAATGGGAAGTTATTTTTGTCCCTGTTTGCCGTTATCACTAATAAACCCACTTTAAACTAAAGGCTTCCTTTCAGGGGCATTAATTTCCCTCATCCCGCCTCGCTGCTTCCATTTCAGTCAGTTGTCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173023 lncRNA downstream 78785 20951938 ~ 20956378 (-) True G137591
TU172975 lncRNA downstream 118881 20832999 ~ 20916282 (-) True G137559
TU172957 lncRNA downstream 205796 20819325 ~ 20829367 (-) True G137558
TU172899 lncRNA downstream 457320 20569818 ~ 20577843 (-) True G137517
TU172901 lncRNA downstream 483018 20542765 ~ 20552145 (-) True G137518
TU173054 lncRNA upstream 58491 21096922 ~ 21097296 (-) True G137619
TU173063 lncRNA upstream 128027 21166458 ~ 21169358 (-) True G137628
TU173181 lncRNA upstream 265041 21303472 ~ 21306761 (-) True G137699
TU173183 lncRNA upstream 269787 21308218 ~ 21315238 (-) True G137701
TU173196 lncRNA upstream 325861 21364292 ~ 21364924 (-) True G137711
AMCG00012537 mRNA downstream 129402 20901724 ~ 20905761 (-) True AMCG00012537
AMCG00012527 mRNA downstream 172545 20859265 ~ 20862618 (-) True AMCG00012527
AMCG00012528 mRNA downstream 175960 20858725 ~ 20859203 (-) True AMCG00012528
AMCG00012526 mRNA downstream 200671 20832941 ~ 20834492 (-) True AMCG00012526
AMCG00012524 mRNA downstream 292165 20703429 ~ 20742998 (-) True AMCG00012524
AMCG00012541 mRNA upstream 1687 21040118 ~ 21042443 (-) False AMCG00012541
AMCG00012545 mRNA upstream 81685 21120116 ~ 21121378 (-) True AMCG00012545
AMCG00012548 mRNA upstream 149746 21188177 ~ 21212016 (-) True AMCG00012548
AMCG00012547 mRNA upstream 186310 21224741 ~ 21230841 (-) True AMCG00012547
AMCG00012552 mRNA upstream 231309 21269740 ~ 21274408 (-) True AMCG00012552
TU172771 other downstream 764299 20261002 ~ 20270864 (-) True G137408
TU172597 other downstream 1124785 19904422 ~ 19910378 (-) False AMCG00012503
TU172548 other downstream 1241632 19714162 ~ 19793531 (-) True G137246
TU172550 other downstream 1241632 19744335 ~ 19793531 (-) False G137246
TU172487 other downstream 1527769 19441927 ~ 19507394 (-) True G137199
TU173044 other upstream 1658 21040089 ~ 21042443 (-) True AMCG00012541
TU173202 other upstream 395233 21433664 ~ 21618770 (-) True AMCG00012559
TU173211 other upstream 458248 21496679 ~ 21502199 (-) True AMCG00012556
TU173345 other upstream 1039742 22078173 ~ 22088469 (-) True AMCG00012564
TU173346 other upstream 1039742 22078173 ~ 22088469 (-) False AMCG00012564

Expression Profile