RNA id: TU173054


Basic Information

Item Value
RNA id TU173054
length 315
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G137619
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 21096922 ~ 21097296 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTTTCAAAGTGTGTTTTCCAGATTTCTCCATTTTTAAttggtatttcattttttgtttttggggtatttattCTGCCCATATAGTGGTCTTTTTTCTTCCTGAGGAGTTGCTTGTAGTGCCGCAGGACCTGGCAGTAGCTGAGGCGAGCCTCCTGGTTGTCGGGCTCTCTGTGTTTAGTGTTGGAGAGATGTCTCAGGTGTTTCCTAGAAGTTTCACACTCCTGGTCAAAccactgttctttttttcttttagacgattttatattttggtttttaattgttttaatgtttgattttaAGCCagtctttcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173039 lncRNA downstream 2926 21030092 ~ 21093996 (-) True G137605
TU173034 lncRNA downstream 57155 21034530 ~ 21039767 (-) True G137601
TU173023 lncRNA downstream 140544 20951938 ~ 20956378 (-) True G137591
TU172975 lncRNA downstream 180640 20832999 ~ 20916282 (-) True G137559
TU172957 lncRNA downstream 267555 20819325 ~ 20829367 (-) True G137558
TU173063 lncRNA upstream 69162 21166458 ~ 21169358 (-) True G137628
TU173181 lncRNA upstream 206176 21303472 ~ 21306761 (-) True G137699
TU173183 lncRNA upstream 210922 21308218 ~ 21315238 (-) True G137701
TU173196 lncRNA upstream 266996 21364292 ~ 21364924 (-) True G137711
TU173193 lncRNA upstream 327875 21425171 ~ 21426245 (-) True G137709
AMCG00012541 mRNA downstream 54479 21040118 ~ 21042443 (-) False AMCG00012541
AMCG00012537 mRNA downstream 191161 20901724 ~ 20905761 (-) True AMCG00012537
AMCG00012527 mRNA downstream 234304 20859265 ~ 20862618 (-) True AMCG00012527
AMCG00012528 mRNA downstream 237719 20858725 ~ 20859203 (-) True AMCG00012528
AMCG00012526 mRNA downstream 262430 20832941 ~ 20834492 (-) True AMCG00012526
AMCG00012545 mRNA upstream 22820 21120116 ~ 21121378 (-) True AMCG00012545
AMCG00012548 mRNA upstream 90881 21188177 ~ 21212016 (-) True AMCG00012548
AMCG00012547 mRNA upstream 127445 21224741 ~ 21230841 (-) True AMCG00012547
AMCG00012552 mRNA upstream 172444 21269740 ~ 21274408 (-) True AMCG00012552
AMCG00012551 mRNA upstream 186005 21283301 ~ 21290412 (-) True AMCG00012551
TU173044 other downstream 54479 21040089 ~ 21042443 (-) True AMCG00012541
TU173042 other downstream 58491 21035163 ~ 21038431 (-) True G137608
TU172771 other downstream 826058 20261002 ~ 20270864 (-) True G137408
TU172597 other downstream 1186544 19904422 ~ 19910378 (-) False AMCG00012503
TU172548 other downstream 1303391 19714162 ~ 19793531 (-) True G137246
TU173202 other upstream 336368 21433664 ~ 21618770 (-) True AMCG00012559
TU173211 other upstream 399383 21496679 ~ 21502199 (-) True AMCG00012556
TU173345 other upstream 980877 22078173 ~ 22088469 (-) True AMCG00012564
TU173346 other upstream 980877 22078173 ~ 22088469 (-) False AMCG00012564
TU173344 other upstream 1006357 22103653 ~ 22120556 (-) True AMCG00012566

Expression Profile