RNA id: TU173085


Basic Information

Item Value
RNA id TU173085
length 3508
RNA type TUCP
GC content 0.43
exon number 3
gene id G137636
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 21224741 ~ 21230836 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGAGTGAGGACTGGATTTTAAAGTCgcctttaaatggaaaaacaaagtagtgtaaacattaaattcagGCACTATAGGCCTACTTTTACTAAATTGTGTCATTGCACAAACcataaaacaatgacaatagAGGTGATTTTTTATATCGTTAAGTAttcatccattttattttgtgatgttCAAAGTAATTCATGAGGTGAACTTAATTGCTTATGCAAAAACCAGAATGTGTGAGCTCTCGGCCGATCAAATCAGCACAGTTCCACTGGCACAATAGATCATTGTTACCCGACACTGACAGGCCTTctcgattattattttttaattcattattcaaattattttcttgccAATTACTTAGAAAGAACATGCcagcatttatattattattgtattattattacactcaGCCACTCCACATCAGCTGCCATGTAAGTCCATTGTGATACTTTGAACATACCTCGCATCTTTGCTCTTCTAGAAACTGGTATTTGTGAGAAatggcagtttattttaaagacttaTGCAGCTCTTAAGAAGAAGAATGGgagttttcttttccttttcttaaagGGGCTGGCCATGCAATTCTGCCCATATCACTTCCCCACATCCCCGTGATGTCCCAGACTTCCACCCTCTCCAAACACACGTGTGTCCATGCCAAATACCATAGTGTGTCCATCATCCTGTGAATGGCAATGATTCCCAAGTGAACACTGAGTCACCTGCAGTAGTTTTCCAGGAGAGAAGCTGAACACAAATTAAGGATTCAAACCAAACACATCTGGGAGCAGCAGTGATAAACCCAGTTGATCAACGGACATGGTCTCATTATCGAGGGTCGGTGTGTTTACACTGCATGTGCTGTGTCCTCTAAGACAGCTGGAGGGGTCATCTGGGAGTCAACAGCAGGAAGGGGCAGGAGAGAAGAGAAGGTCATGCAGAGTCCAACAGCACCGAGGACACAGAAGGGACAGTGTATACAGTACAAATCAGATCCTTGTTACTGGAGGATAACAGTGTTGCCTTATTCCAATTTTTGGGAGAAAttggaatgttaaaaaaaacacatttgaagcaTTTGTTCGGGAGTTTTCACTCTTAATATGCTATACAATGCTATATCTTTTAATTTCTGGCATTTGGAAAAACTTGGGTTGAATTACAGTGCGTGACAACTGCTTTGGCTGATGAATGGCGATGTATTCACTACACCCAATGAAGGAGACCCATTATTTCAGAACATCTCGGCTCTCTTAGCCTctgctggtttgttctcaggtCAGCAGTAGTGTAGCCAGACAATTTATTTTCCAGGGGTTCAAGGGTAAGAAAATTAACAATGATGAAACTATAGATTCCAGTAATGCCATCGTAGCTTTGCAGTGCACAGTGAGACTCTCTGAAAGGGGGTGGTGGTTGTGTTGTGAGATGATCAGAATAATGGTTTCTCACTTGCTTTCTCTGATGAGGCGGGCTGGGGAGGTGGTCAACATTTCTACAACTTCACCGAAATGTGCGACTGGAGATGGTAGCCCCCTTAGGCTAGGCCACTGCaagtcagtgtctgtgtttgaacACTAGTTGGGAAAGCAGGGTTCTGGGCACCGGGATCTATGAACCACTGACCCTTTAGCTGCTCTTTATGAAGGGTGTTTACATGGACATCATTATTCAAATGACAGCAGCCAAGAGATGTTCACAATCATGTTTACAATCTCACGGGGACTCACAGATTAGTCATAAGATTTCCCATCCACCCCTTTTCGAAAGATACTCCTAATAAAATGTCAGTTCAGTTTGCTTTTCACACGCAGATCATATTGacaaatgtgttgtttcagTGGATCCTAACCCTGGTCTAGGAGGCTCCCTGTTTCTGCTGGTTTCCATTCCAGACCCATTCTTCCCTACTGACCTGACTGCACATGTTtaagaactgaaaacaaaggcCAAAGGCTGATACAAGACCATCATTAGTTCAGGTAAGGACACAGTGAAGAGCTCAATCCTCCAGGCGCAGGAATGGCAACCACTGCATGATTTGAATCGAGACATACAGTCAAGGTCAAGTCTGTTACCAACCCGTGTCCTAGAATTTGAACTACTTTTCTTGATTTCCTTTGGTTGACACTTTTTGTCAGCCACTTCTTCCCTCAGGCATCTGACTGCCCCAGactctcctctctgctctctgcccCATAGTGTGGATGAGCCTCAGCACTGCAGTGTCTGACCATCCTCCCAGGACCTCAGTTTGGATTGCACCTGTAGACCATTCTGATTTCTCATCAACCTTCATGTTCTGCactgtcattatttattaatatagtgATGCTCTTATCTTTCTATTGCTGTGTACATGTAGACAACTGTATGTTAGTGCATTTTACAACCATTAACCATttagcatctgctaaatgacttccataatactaatataaaaagTCATTTCCTCTGACATAATAAGACAAgatgttaaaatatgttaaaaccaccaccaaacaaaacaaaacaaaacagaaaacagaatgaGGAAGAACATGTTGAAAATCACACCATCTCGTTACATGGACACAAAGGATATTCCAAAGCTGACATTTTCCAAATTTCCGAGAGTGTCAAAGTTCTCTTTCCCCGGCTACACAACCTGCTTTAAAAGAGACGTCAGTAAACGGGCTTCAGATGAGCAGACATTGAGAAGAAACTACAGAAAAGCAGTCATCCAGGTAGTGTCTCTAGTGTACTTTCAATGTCTCAGTGGTCCCGTCTCTCGctcacaacccccccacctcacccTCCATAATCAGCCTATGGCTCTGTCACTCTGTGTCCTGCGGAGGGGTGAGGTTGTGAAGACCACTCTCTGTCCGGCACTGGCTGGTGGGACGGCGCGCTGCTAGGCTGTGTTGCTGGCTGAGGGCTGGCCCCATACTGGATGACAATCACAGGCCAGACAAGCAGTCTTCTTCTGCTTCTCCCCCGCAATACTCAGAGCCCCCGAGATGATGTACTAGAGAGAAAAATCATATATCAACCACATCACAAGCCTTTACTTCATGTTCAACATTCATCATAGTGTGGAATGTGAAATCGATGGCTTGGGTGGGTTGGATGCTTTGACATGTAATTGATCTGTGGAGCTGCTTTAAGTATATTGAGTGGTGTGATACGTGTGCAACGTGTGTACAGtcaggtgtgtgtctgtaatcACAGCGAGAGTGACAGTCACAAGCTGCACAAGTGTATTGCtgataaaagtaattttaaaaaggcgATCTGATCTGCAGTTGTTTGATCAGCCATAAAAGGAACCAAAAGAGTATTTCAAGATCTAATAGAGACGGTGAACTGCTGTAacccatttcattttgaattgatAAAATTGGCACTTACTATCAGTGATGGCCAAAATGGGAGCCCGATGTGAAACCCTATGCTGTCCATTTCTCTTTCCACAAGAACTCCAGAGCCTACATTAAACAGTCCAATCATGATCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173083 lncRNA upstream 3697 21220199 ~ 21221044 (+) True G137634
TU172996 lncRNA upstream 184992 21001968 ~ 21039749 (+) False AMCG00012539
TU172927 lncRNA upstream 467477 20757030 ~ 20757264 (+) True G137539
TU172871 lncRNA upstream 690782 20533752 ~ 20533959 (+) True G137494
TU172869 lncRNA upstream 730954 20489764 ~ 20493787 (+) True AMCG00012523
TU173078 lncRNA downstream 1144 21231980 ~ 21267912 (+) True G137631
TU173094 lncRNA downstream 14827 21245663 ~ 21252995 (+) False AMCG00012546
TU173073 lncRNA downstream 39524 21270360 ~ 21332070 (+) False G137629
TU173107 lncRNA downstream 77382 21308218 ~ 21309033 (+) True G137645
TU173146 lncRNA downstream 371163 21601999 ~ 21602314 (+) True G137669
AMCG00012542 mRNA upstream 57964 21148238 ~ 21166777 (+) True AMCG00012542
AMCG00012543 mRNA upstream 111794 21109538 ~ 21112947 (+) True AMCG00012543
AMCG00012544 mRNA upstream 115493 21105119 ~ 21109248 (+) True AMCG00012544
AMCG00012538 mRNA upstream 173936 21044249 ~ 21050805 (+) True AMCG00012538
AMCG00012540 mRNA upstream 186312 21013421 ~ 21038429 (+) True AMCG00012540
AMCG00012546 mRNA downstream 15071 21245907 ~ 21253003 (+) True AMCG00012546
AMCG00012549 mRNA downstream 69228 21300064 ~ 21307188 (+) True AMCG00012549
AMCG00012550 mRNA downstream 84199 21315035 ~ 21317648 (+) True AMCG00012550
AMCG00012553 mRNA downstream 203609 21434445 ~ 21436426 (+) True AMCG00012553
AMCG00012555 mRNA downstream 207647 21438483 ~ 21443188 (+) True AMCG00012555
TU173082 other upstream 5578 21213597 ~ 21219163 (+) True G137633
TU173010 other upstream 165478 21056695 ~ 21059263 (+) True G137583
TU172848 other upstream 784071 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other upstream 784071 20431036 ~ 20440670 (+) False AMCG00012521
TU172707 other upstream 883295 20331081 ~ 20341446 (+) True AMCG00012516
TU173067 other downstream 39524 21270360 ~ 21332070 (+) False G137629
TU173071 other downstream 39524 21270360 ~ 21276736 (+) True G137629
TU173076 other downstream 39524 21270360 ~ 21293405 (+) False G137629
TU173102 other downstream 72389 21303225 ~ 21316451 (+) True G137644
TU173256 other downstream 623870 21854706 ~ 21876542 (+) False G137764

Expression Profile