RNA id: TU173183


Basic Information

Item Value
RNA id TU173183
length 523
lncRNA type inter_gene
GC content 0.58
exon number 4
gene id G137701
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 21308218 ~ 21315238 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCAGGTTGTCGCCAGGGAACAGGATGCGCCTCAGGTAATCCGGCATGGGCTCACTGCCAGTGGCCGGCCTGAGTTTCTTTGGGTATACCAGAGGAGCCGACACCTGGATGAACATGGGGAGACTTCAAAGGAATCCTCCGACATCGATACGCTGTCCAAGCACTACCGCATTCTCCCCATGTTCATCCAGGCGTCTGCTCCTCTGGTAGACTCCAAGAAACTCCGACCAGCCACTGGCAGTGAGCCCATGCCGGATGACCTGAGGCGCCTTCTGTTCCCCGGTGACAGCCTGCGGAAAGGTGCAGGCCTTCGGAGCTGATGCTGGGCAGCTGTGCCGTCCGTAAGACCACTGAGCACTACTACTACTTCATCTACGGGCTGAACGAGTGCGGGAACAATCGATCGATCATTAATGGCCGACTGGTGTACTCCAACATTCTACGCTATTCCCCGCCCCGTTCTTCAGGCCCAGTACTCCGGGGTGTGTCCTTCACTGTGCCCATCCAGCTTGTCTACAACCG

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173181 lncRNA downstream 1457 21303472 ~ 21306761 (-) True G137699
TU173063 lncRNA downstream 138860 21166458 ~ 21169358 (-) True G137628
TU173054 lncRNA downstream 210922 21096922 ~ 21097296 (-) True G137619
TU173039 lncRNA downstream 214222 21030092 ~ 21093996 (-) True G137605
TU173034 lncRNA downstream 268451 21034530 ~ 21039767 (-) True G137601
TU173196 lncRNA upstream 49054 21364292 ~ 21364924 (-) True G137711
TU173193 lncRNA upstream 109933 21425171 ~ 21426245 (-) True G137709
TU173220 lncRNA upstream 335525 21650763 ~ 21657742 (-) True G137733
TU173230 lncRNA upstream 371792 21687030 ~ 21687264 (-) True G137742
TU173331 lncRNA upstream 760447 22075685 ~ 22076815 (-) True G137828
AMCG00012551 mRNA downstream 17806 21283301 ~ 21290412 (-) True AMCG00012551
AMCG00012552 mRNA downstream 33810 21269740 ~ 21274408 (-) True AMCG00012552
AMCG00012547 mRNA downstream 77377 21224741 ~ 21230841 (-) True AMCG00012547
AMCG00012548 mRNA downstream 96202 21188177 ~ 21212016 (-) True AMCG00012548
AMCG00012545 mRNA downstream 186840 21120116 ~ 21121378 (-) True AMCG00012545
AMCG00012554 mRNA upstream 34207 21349445 ~ 21358802 (-) True AMCG00012554
AMCG00012556 mRNA upstream 178989 21494227 ~ 21497187 (-) False AMCG00012556
AMCG00012559 mRNA upstream 294336 21609574 ~ 21635426 (-) False AMCG00012559
AMCG00012561 mRNA upstream 384813 21700051 ~ 21703968 (-) True AMCG00012561
AMCG00012562 mRNA upstream 423718 21738956 ~ 21740372 (-) True AMCG00012562
TU173044 other downstream 265775 21040089 ~ 21042443 (-) True AMCG00012541
TU173042 other downstream 269787 21035163 ~ 21038431 (-) True G137608
TU172771 other downstream 1037354 20261002 ~ 20270864 (-) True G137408
TU172597 other downstream 1397840 19904422 ~ 19910378 (-) False AMCG00012503
TU172550 other downstream 1514687 19744335 ~ 19793531 (-) False G137246
TU173202 other upstream 118426 21433664 ~ 21618770 (-) True AMCG00012559
TU173211 other upstream 181441 21496679 ~ 21502199 (-) True AMCG00012556
TU173345 other upstream 762935 22078173 ~ 22088469 (-) True AMCG00012564
TU173346 other upstream 762935 22078173 ~ 22088469 (-) False AMCG00012564
TU173344 other upstream 788415 22103653 ~ 22120556 (-) True AMCG00012566

Expression Profile