RNA id: TU173196


Basic Information

Item Value
RNA id TU173196
length 599
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G137711
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 21364292 ~ 21364924 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctcaatcaatcagattccaaactctccaccatggccaagaccaaagagctgtccaaggatgtcagggacaagattgtagacctacacaaggctggaatgagctacaagaccatcgccaagcagcttggttagaaggtgacaacagttggtgtgattattcgcaaatggaagaaacacaaaataactgtcagtctccctcggtctggggtccatgcaagatctcaacTCGTGGAGTtccaatgatcatgagaacagtgaggaatcagcccagaactacatgggaggatcttgttaatgatctcaaggcagctgggaccatagtcaccaagaaaacaattggtagcACACTACGccatgaaggactgaaatcctgcagcgcctgCAAGGTctgaagtttgccaatgaacatctgaatgattcagaggagaactgggtgaaagtgttgtggtcagatgagaccaaaatcgagctctttggcatcaactcaactcgccatgtttggaggaggaggaatgctgcctatgaccccaagaacaccatccccaccgtcaaacatggaggtggaaacattatgctttgggggtatTTTTCTGCTAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173183 lncRNA downstream 49054 21308218 ~ 21315238 (-) True G137701
TU173181 lncRNA downstream 57531 21303472 ~ 21306761 (-) True G137699
TU173063 lncRNA downstream 194934 21166458 ~ 21169358 (-) True G137628
TU173054 lncRNA downstream 266996 21096922 ~ 21097296 (-) True G137619
TU173039 lncRNA downstream 270296 21030092 ~ 21093996 (-) True G137605
TU173193 lncRNA upstream 60247 21425171 ~ 21426245 (-) True G137709
TU173220 lncRNA upstream 285839 21650763 ~ 21657742 (-) True G137733
TU173230 lncRNA upstream 322106 21687030 ~ 21687264 (-) True G137742
TU173331 lncRNA upstream 710761 22075685 ~ 22076815 (-) True G137828
TU173350 lncRNA upstream 763021 22127945 ~ 22128292 (-) True G137842
AMCG00012554 mRNA downstream 5490 21349445 ~ 21358802 (-) True AMCG00012554
AMCG00012551 mRNA downstream 73880 21283301 ~ 21290412 (-) True AMCG00012551
AMCG00012552 mRNA downstream 89884 21269740 ~ 21274408 (-) True AMCG00012552
AMCG00012547 mRNA downstream 133451 21224741 ~ 21230841 (-) True AMCG00012547
AMCG00012548 mRNA downstream 152276 21188177 ~ 21212016 (-) True AMCG00012548
AMCG00012556 mRNA upstream 129303 21494227 ~ 21497187 (-) False AMCG00012556
AMCG00012559 mRNA upstream 244650 21609574 ~ 21635426 (-) False AMCG00012559
AMCG00012561 mRNA upstream 335127 21700051 ~ 21703968 (-) True AMCG00012561
AMCG00012562 mRNA upstream 374032 21738956 ~ 21740372 (-) True AMCG00012562
AMCG00012563 mRNA upstream 662694 22027618 ~ 22039234 (-) True AMCG00012563
TU173044 other downstream 321849 21040089 ~ 21042443 (-) True AMCG00012541
TU173042 other downstream 325861 21035163 ~ 21038431 (-) True G137608
TU172771 other downstream 1093428 20261002 ~ 20270864 (-) True G137408
TU172597 other downstream 1453914 19904422 ~ 19910378 (-) False AMCG00012503
TU172550 other downstream 1570761 19744335 ~ 19793531 (-) False G137246
TU173202 other upstream 68740 21433664 ~ 21618770 (-) True AMCG00012559
TU173211 other upstream 131755 21496679 ~ 21502199 (-) True AMCG00012556
TU173345 other upstream 713249 22078173 ~ 22088469 (-) True AMCG00012564
TU173346 other upstream 713249 22078173 ~ 22088469 (-) False AMCG00012564
TU173344 other upstream 738729 22103653 ~ 22120556 (-) True AMCG00012566

Expression Profile