RNA id: TU173220


Basic Information

Item Value
RNA id TU173220
length 591
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G137733
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 21650763 ~ 21657742 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAAGTAGAGCTAAAAGGGAGAAAAGAGAAAGCCAATGTTGTTCTCGTGTTTGCGAAAAGCTGTAACGATTCCTGATGAAACTATTATCTAAAGCTAACTATTCCCAGCGTGGTGTTTCTCGATGTGTGGGAATGCCCTTGGAGTCGTGCTGTCCACTACTGCTgcaactgaaacaaacacatggaACGAAAGagccgctccttctcatccctggccccaaAATGGTGGGATGACCTTCCCacagaagtcaaaacagcagagtcctgacctccttccggcgcttactcaagacacccctttccgacagtacttgtaatattagtgcTTAACTCTCCTGTAAGacagcactttacaatgtttcaTCTACTTCTTGCGTTACTAGAACTCgtagttattttgatttcctcttgctccctttcccgtggCCCTGACTGTGACCtcacatcttgacagcactcaGCTTTTAAacccaggatgtaagacctcatatattgtattcacttgtgtaaatttgaatttgtaatgttttatgcttttgtgacatttaatgcataattgctaatatcaagaatacaatttttgcgatcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173193 lncRNA downstream 224518 21425171 ~ 21426245 (-) True G137709
TU173196 lncRNA downstream 285839 21364292 ~ 21364924 (-) True G137711
TU173183 lncRNA downstream 335525 21308218 ~ 21315238 (-) True G137701
TU173181 lncRNA downstream 344002 21303472 ~ 21306761 (-) True G137699
TU173063 lncRNA downstream 481405 21166458 ~ 21169358 (-) True G137628
TU173230 lncRNA upstream 29288 21687030 ~ 21687264 (-) True G137742
TU173331 lncRNA upstream 417943 22075685 ~ 22076815 (-) True G137828
TU173350 lncRNA upstream 470203 22127945 ~ 22128292 (-) True G137842
TU173355 lncRNA upstream 523089 22180831 ~ 22181039 (-) True G137847
TU173385 lncRNA upstream 650699 22308441 ~ 22326347 (-) True G137870
AMCG00012559 mRNA downstream 15337 21609574 ~ 21635426 (-) False AMCG00012559
AMCG00012556 mRNA downstream 153576 21494227 ~ 21497187 (-) False AMCG00012556
AMCG00012554 mRNA downstream 291961 21349445 ~ 21358802 (-) True AMCG00012554
AMCG00012551 mRNA downstream 360351 21283301 ~ 21290412 (-) True AMCG00012551
AMCG00012552 mRNA downstream 376355 21269740 ~ 21274408 (-) True AMCG00012552
AMCG00012561 mRNA upstream 42309 21700051 ~ 21703968 (-) True AMCG00012561
AMCG00012562 mRNA upstream 81214 21738956 ~ 21740372 (-) True AMCG00012562
AMCG00012563 mRNA upstream 369876 22027618 ~ 22039234 (-) True AMCG00012563
AMCG00012564 mRNA upstream 420999 22078741 ~ 22082729 (-) False AMCG00012564
AMCG00012566 mRNA upstream 446927 22104669 ~ 22120095 (-) False AMCG00012566
TU173202 other downstream 31993 21433664 ~ 21618770 (-) True AMCG00012559
TU173211 other downstream 148564 21496679 ~ 21502199 (-) True AMCG00012556
TU173044 other downstream 608320 21040089 ~ 21042443 (-) True AMCG00012541
TU173042 other downstream 612332 21035163 ~ 21038431 (-) True G137608
TU172771 other downstream 1379899 20261002 ~ 20270864 (-) True G137408
TU173345 other upstream 420431 22078173 ~ 22088469 (-) True AMCG00012564
TU173346 other upstream 420431 22078173 ~ 22088469 (-) False AMCG00012564
TU173344 other upstream 445911 22103653 ~ 22120556 (-) True AMCG00012566
TU173508 other upstream 1264141 22921883 ~ 23049378 (-) True G137974
TU173535 other upstream 1445725 23103467 ~ 23120688 (-) True G137996

Expression Profile