RNA id: TU173255


Basic Information

Item Value
RNA id TU173255
length 3421
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G137764
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 21854706 ~ 21876542 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tagatagatagataaccGATGGTGTCCATGGGAGAAAAAACAAGACGTggcattgtttacattttatatttgaggttattttgtttattaatgcaatagaaggtgacaaattacatttaaaatatattgaaatgcactTAATTGGTGAAAGAAAACTGTTAAgcttaatgtatttgttttgatttaataagaTTGTGAACTGTGtataaaatgaacagaaatacTAAGAATTCCTGTTCCTGTATCCCAAAGTTGGAGACAATGATCACACTGAGGACACAAGAACAATAAAgcttgttgcttttcttttctcccacATACTGGAGCCtgggttgttttattattaatgggataaaataaataaataaacgcaaagtaaaagaatatacatatacacaaacaatcTAGTTATTTAGCCTTACAATAAGATTTAACCTTGGTTAAGGTAATGTCTTAGCATCTGGCTGTAGTAAGATAGCATAGATCCATAGGTTTGCATTTATGCTGCATGTAAAGTCATTTGAGTATATTTCTGCTGTCAgaactgtgtatatttgtattaatattcttTGTATGGTTATTGGctatattgattattatatgactgatttatgttattgttatttctttgtagAACCACCCATACATATTAATCAaatttaatattacaattactgaaGACACCGTTTTGGATACAGTGCTAGTGCTGCAATAAAGGGACACTGTTTGGAATGAATGAGAATAAGtaagaaaacataaatcagtTTTCTTACAGATGCCCTACAACGATCACACCTTTTGAACGATCAGCTATTTAACTCTTTCATCAACCTCCATTACCTACAAcataattttgagaaatacaagttttctttcaagtgtgctgcacgaaccatccacttatttatacttcgttttatgtcacttgtttgctgcTAGAAAAGCAAGGCGAGTAAGGCTGTAGAACAATGCAACATTATgcgtattttttattttgtttgtttttaaaataaaatctcaaagacataaagctatccagtttctgtgtgagtCTATGAACACAATAATTGGTGGTGGAATTGGCTACGATGCAAGGGGCACCAGCTAAAATCTTGCCTACGACACTAAATtggtcagggccggccctgcctgtgtgtcttgtaaacaaggtcactgtcgcAAGTTCTTACTCTCATGGTACTGTTAtagatacctagaagaacacagtctgataagaaccagttttcacccgGGATGTGGGCTTGATACATCCAACAAggcccccttatattaaacattatttatgaattacTTTTTCCCCGGTTTAGCCATATACGGGTCTTCCTATCCAgctgtcaggcagaaaccgagcttccactcatcatgggacagacatgtgggccctgttatctgtctctcctgtctggtctgcataaaagtgcctgtaatgtgtaacttctctaagacacCTCCTAATTAAATTCCTcttgattgaaaataaatctctcgATTATTTGGACTCTTCAGTGTATGTTtcagattaataaaaacaggaattTGAGAGCCTACACAGCGTTATTATTTAATGCACTTAACACTCAGAAGTAAACAAAGGaaactaatattaatacataaaataaaaaacagacatcTGATACTGGGATGAGAAAGGTACTGCTACTGGTTGACAGCACACACAGCCACTGTCTCAGCTAGGAGAGACCAAAGAGACCAGCACGGAACTCACACAGGGAGCAGGGGTCATctgtgagtgcgctggtgtgATTTAAGCGTTCTTTTCTgagtgaagctcttcccacacaggGTGCAGCAgaacggtttctctcctgtgtgagtgcaCTGGTGACTATAAAGGTTTGATACATcactgaagctcttcccacacaggGTGCAGCAGttcggtttctctcctgtgtgagtgcgctggtggAGTTTAAGTGCTCCCGAATGAAtaaaactcttcccacactcagtgcagcagtacggtctctctcctgtgtgagtgcgctggtggAGTTTAAGATATCCTGACTgactgaaactcttcccacactggagGCAGCTGTACGGTCTCTTTTCTGTGCAAGATCGCGGATGTCTACTTAAGACTCCTGTGTGAGTATAGCTCCTCGCACTCTGATGCTGGTGAAGCCGTTTTCCATGCTGCAGTGGGAGAGGTGAGGagggggagctggaggagctctGTGGTCTAGGGGGTCTGGGACGCAGTTGTCTGTGCTTTGACGATGGGTTCTCCCCACTCACTGCACTGGTACTCCCCCCACTAAGGCCCGTCCTCAAAGCAGTGGACCCTaggtcacactgtccagctactGGGAGCTCAGGCCCcaggtcacactgtccagctacagggagctcaggccCTGGGTTAtactgtccagctacagggagctcaggccACAGGTCACAGGCACTATCCGTAATATTGTCAATTTTTAGATCACCGAGTGCATCTCTGAAGGGAGTTGCTGTTCTCGGCTCCACCGTGTAAACAGACTCCAGTGTGTCGTActctgttttgatgtgatcAGGCATCAGACTGGGTCCCCACTCAGATCCCAGAGACTGGGTCCTGCAGAGATCCGCAGTGTGGGTGCAGTCCAGCTCAGGGTCGCTCTTTATGACCTTTGACCCTGTGGTGTCAGATGCCAGTGCCCCGAGTCCCTGTGTTGACCCCTCAGTGTGTGGCTCTGCCATGTTTCCAGACTCCTGTCCCCTGAGCTCCTCCTGACTCCGTCTGCCCCTGGGCTGCTCATTCAGCCCCTGGTTGCCTTCAgtagctgtgggctctgtgtcctgcctcagactggagccccactcctgctcccagtgctgctgctcaatgggagccctttccccagagtcaggaagagcgctggcctctacagctcctgggggagagacgACACAGGAGAATAGCACTTGAGAATAGCATCTCTGAAAACTCACACAAATAATGTCATTATATCAGAACATCATTCAGAAGTGCTAATAGTGTTCAGTCAGCATATAAACTAGGAGCATGTATGAAGTCAGACAGTAAAAGCACAGACTGGCACTCGTATGTGGGAAGTCAGTCAAAGGGATTTCaggatatcttgaaatatttaatctctAAATACTGTACAGCTGTCTTGGTTTGATTTGTAGATCACTTGATTAGAATGCACATATGCCAAATGCCACTTTACACCCTTTGAATATCTCATGCTAGAATATGGTATTGCTGTATTTGATGAATTACATAATTTGAATCAAGATCTGGACTTGAGTGAGGTTGCTGAATGAAACTGAATAACCTAGTTCTTATGTAGGTCTACAGCAAGGGCTTTTTTGGATAGTGCTGATGCTTTATGGGATGTGTCCAGATAAAATTACT

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173242 lncRNA upstream 40843 21798503 ~ 21813863 (+) True G137754
TU173237 lncRNA upstream 68661 21780066 ~ 21786045 (+) True G137749
TU173146 lncRNA upstream 252392 21601999 ~ 21602314 (+) True G137669
TU173073 lncRNA upstream 522636 21270360 ~ 21332070 (+) False G137629
TU173317 lncRNA downstream 147051 22005381 ~ 22005678 (+) True G137814
TU173330 lncRNA downstream 217513 22075843 ~ 22076870 (+) True G137827
TU173364 lncRNA downstream 450083 22308413 ~ 22326350 (+) True G137851
TU173479 lncRNA downstream 1062859 22921189 ~ 22922372 (+) True G137951
TU173477 lncRNA downstream 1063179 22921509 ~ 22922336 (+) False G137951
AMCG00012558 mRNA upstream 201406 21647378 ~ 21653300 (+) True AMCG00012558
AMCG00012560 mRNA upstream 208348 21642734 ~ 21646358 (+) True AMCG00012560
AMCG00012557 mRNA upstream 363228 21490849 ~ 21491478 (+) True AMCG00012557
AMCG00012555 mRNA upstream 411518 21438483 ~ 21443188 (+) True AMCG00012555
AMCG00012553 mRNA upstream 418280 21434445 ~ 21436426 (+) True AMCG00012553
AMCG00012567 mRNA downstream 313955 22172285 ~ 22193641 (+) True AMCG00012567
AMCG00012569 mRNA downstream 362303 22220633 ~ 22320428 (+) True AMCG00012569
AMCG00012568 mRNA downstream 462584 22320914 ~ 22329746 (+) True AMCG00012568
AMCG00012570 mRNA downstream 531872 22390202 ~ 22430060 (+) True AMCG00012570
AMCG00012571 mRNA downstream 593805 22452135 ~ 22455561 (+) True AMCG00012571
TU173067 other upstream 522636 21270360 ~ 21332070 (+) False G137629
TU173102 other upstream 538255 21303225 ~ 21316451 (+) True G137644
TU173076 other upstream 561301 21270360 ~ 21293405 (+) False G137629
TU173071 other upstream 577970 21270360 ~ 21276736 (+) True G137629
TU173085 other upstream 623870 21224741 ~ 21230836 (+) True G137636
TU173274 other downstream 73965 21932295 ~ 21958158 (+) True G137775
TU173418 other downstream 707094 22565424 ~ 22566106 (+) True G137899
TU173473 other downstream 959623 22817953 ~ 22818458 (+) True G137947
TU173480 other downstream 1029208 22887538 ~ 22888056 (+) False AMCG00012579
TU173653 other downstream 1851188 23709518 ~ 23742591 (+) False AMCG00012593

Expression Profile