RNA id: TU173317


Basic Information

Item Value
RNA id TU173317
length 298
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G137814
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 22005381 ~ 22005678 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGTGTGGCTGAGCAGTGGAATATTATCGAACACGTACATTATAGACTTGCACAGTTTACCAATGAAACAATCATGGCACTAGAAGCCGTCAGGGTTGAGCTAACGGCAACACGGCTCATGACCACCCAGAATCAATTAGCGCTTGACATGTTACTAGCCAAGGAGGGGGGCGTCTGCACTCTCATTGGAAAACACTGCTGTACCTTTATCCCACCAAATGATGCGAATGAAGGAAATATTACCAAAGCTTTACAGGATATGAGAGACGTTGCCAAGCAGCTTCAAAAAGATGAAGTG

Function

GO:

id name namespace
GO:0035239 tube morphogenesis biological_process
GO:0033692 cellular polysaccharide biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009103 lipopolysaccharide biosynthetic process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:1903509 liposaccharide metabolic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0008610 lipid biosynthetic process biological_process
GO:0034637 cellular carbohydrate biosynthetic process biological_process
GO:0008653 lipopolysaccharide metabolic process biological_process
GO:0000271 polysaccharide biosynthetic process biological_process
GO:0016051 carbohydrate biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173251 lncRNA upstream 47027 21836242 ~ 21958354 (+) True G137761
TU173255 lncRNA upstream 147051 21854706 ~ 21858330 (+) True G137764
TU173242 lncRNA upstream 191518 21798503 ~ 21813863 (+) True G137754
TU173237 lncRNA upstream 219336 21780066 ~ 21786045 (+) True G137749
TU173146 lncRNA upstream 403067 21601999 ~ 21602314 (+) True G137669
TU173330 lncRNA downstream 70165 22075843 ~ 22076870 (+) True G137827
TU173364 lncRNA downstream 302735 22308413 ~ 22326350 (+) True G137851
TU173479 lncRNA downstream 915511 22921189 ~ 22922372 (+) True G137951
TU173477 lncRNA downstream 915831 22921509 ~ 22922336 (+) False G137951
TU173523 lncRNA downstream 1052408 23058086 ~ 23058391 (+) True G137984
AMCG00012558 mRNA upstream 352081 21647378 ~ 21653300 (+) True AMCG00012558
AMCG00012560 mRNA upstream 359023 21642734 ~ 21646358 (+) True AMCG00012560
AMCG00012557 mRNA upstream 513903 21490849 ~ 21491478 (+) True AMCG00012557
AMCG00012555 mRNA upstream 562193 21438483 ~ 21443188 (+) True AMCG00012555
AMCG00012553 mRNA upstream 568955 21434445 ~ 21436426 (+) True AMCG00012553
AMCG00012567 mRNA downstream 166607 22172285 ~ 22193641 (+) True AMCG00012567
AMCG00012569 mRNA downstream 214955 22220633 ~ 22320428 (+) True AMCG00012569
AMCG00012568 mRNA downstream 315236 22320914 ~ 22329746 (+) True AMCG00012568
AMCG00012570 mRNA downstream 384524 22390202 ~ 22430060 (+) True AMCG00012570
AMCG00012571 mRNA downstream 446457 22452135 ~ 22455561 (+) True AMCG00012571
TU173274 other upstream 47223 21932295 ~ 21958158 (+) True G137775
TU173256 other upstream 128839 21854706 ~ 21876542 (+) False G137764
TU173067 other upstream 673311 21270360 ~ 21332070 (+) False G137629
TU173102 other upstream 688930 21303225 ~ 21316451 (+) True G137644
TU173076 other upstream 711976 21270360 ~ 21293405 (+) False G137629
TU173418 other downstream 559746 22565424 ~ 22566106 (+) True G137899
TU173473 other downstream 812275 22817953 ~ 22818458 (+) True G137947
TU173480 other downstream 881860 22887538 ~ 22888056 (+) False AMCG00012579
TU173653 other downstream 1703840 23709518 ~ 23742591 (+) False AMCG00012593

Expression Profile