RNA id: TU173331


Basic Information

Item Value
RNA id TU173331
length 1131
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G137828
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 22075685 ~ 22076815 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaaaatggTCCAGAATTAGACATTACATATTATTTCAAGgccattaaaaacagtattgtCGAAACGACTACACAGCAGATCATGTTAGCATTGATATGGCAGGTGCCTCTGTCTTGTTATTTCTTCAGGCAAacgtaaagaaaataaaataataattaagtgcaaagtaaaacaaaagcgGATGccgataaaaaaataaaaaggtttattgtttaaaaactcAAAGTATATCAAAGCTCACTGTTTAATTAGAAAGTcgtgaaataataaaacataataaatgaaaCCTCACAGTTAACATTAACTCCACCCCTCGACATAGTTTATAGAATGAGTTGAACAAAGTTGCTGACTTGTGGAACACTCATCGAATTCGTCCAATGTGCAACCAGATGGCACCAAACGGACGTCCCGTGACTAAGTACAACCTGCCACATCTGTATGGTGCTGAAAATCATCTGTGCCAAGTGACAGAAGAGCAGATCAGCCTGTGCCGGGAAGAATGTGTTCAAAAGGGTCCCTACCCCTTGCGATGAAACTGTGTTCGACCTGTGTTGTATTCTGATGCAGTAAAACGTCTGCAGTCCACCAACTAAGCCAGAGGAAGCTGTAGAACTCTGAATCTGAATCTCTGAGAAACTGTATTCTGTCCAGTTTGTAAAGCAGTAAAGGATTGTCCATCTCCACTGCACTTACATTTTCAACTTGATCAAGACCAAAGTTTGgaagtattttagtttttttttttttttttttaatacttttttgtgGGAAATGCAAACCCATCATAGAAACATCAATGTCATTTTAGGGTTACTGAATAAGTGTTACAAAACTGTAGAATTGTGCATGTCAATTGTACATGATTGTGTGTGATTAAGGGGTCCTGAGCTCTGAATGAACCTGCTATTCTGTGTCCAACTGCACTTTGCCAAAGGTTTCTCTTTGGGTAAACATGGAAGCCTGTGTAGTGGGAACatgtacttttattatattctttagattattattaatggtttcaggttgttaattcagttttgtctacaaagcaattatacatttgtatttacagcTTTATGTTGTCTACTTTATACGTTTATTGGATTCTTTACATCTATGGTCTTTTGGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173230 lncRNA downstream 388421 21687030 ~ 21687264 (-) True G137742
TU173220 lncRNA downstream 417943 21650763 ~ 21657742 (-) True G137733
TU173193 lncRNA downstream 649440 21425171 ~ 21426245 (-) True G137709
TU173196 lncRNA downstream 710761 21364292 ~ 21364924 (-) True G137711
TU173183 lncRNA downstream 760447 21308218 ~ 21315238 (-) True G137701
TU173350 lncRNA upstream 51130 22127945 ~ 22128292 (-) True G137842
TU173355 lncRNA upstream 104016 22180831 ~ 22181039 (-) True G137847
TU173385 lncRNA upstream 231626 22308441 ~ 22326347 (-) True G137870
TU173460 lncRNA upstream 647162 22723977 ~ 22724234 (-) True G137934
TU173467 lncRNA upstream 694109 22770924 ~ 22771248 (-) True G137941
AMCG00012563 mRNA downstream 36451 22027618 ~ 22039234 (-) True AMCG00012563
AMCG00012562 mRNA downstream 335313 21738956 ~ 21740372 (-) True AMCG00012562
AMCG00012561 mRNA downstream 371717 21700051 ~ 21703968 (-) True AMCG00012561
AMCG00012559 mRNA downstream 440259 21609574 ~ 21635426 (-) False AMCG00012559
AMCG00012556 mRNA downstream 578498 21494227 ~ 21497187 (-) False AMCG00012556
AMCG00012564 mRNA upstream 1926 22078741 ~ 22082729 (-) False AMCG00012564
AMCG00012566 mRNA upstream 27854 22104669 ~ 22120095 (-) False AMCG00012566
AMCG00012565 mRNA upstream 75604 22152419 ~ 22165738 (-) True AMCG00012565
AMCG00012572 mRNA upstream 511325 22588140 ~ 22601168 (-) True AMCG00012572
AMCG00012574 mRNA upstream 525363 22602178 ~ 22608156 (-) True AMCG00012574
TU173202 other downstream 456915 21433664 ~ 21618770 (-) True AMCG00012559
TU173211 other downstream 573486 21496679 ~ 21502199 (-) True AMCG00012556
TU173044 other downstream 1033242 21040089 ~ 21042443 (-) True AMCG00012541
TU173042 other downstream 1037254 21035163 ~ 21038431 (-) True G137608
TU172771 other downstream 1804821 20261002 ~ 20270864 (-) True G137408
TU173345 other upstream 1358 22078173 ~ 22088469 (-) True AMCG00012564
TU173346 other upstream 1358 22078173 ~ 22088469 (-) False AMCG00012564
TU173344 other upstream 26838 22103653 ~ 22120556 (-) True AMCG00012566
TU173508 other upstream 845068 22921883 ~ 23049378 (-) True G137974
TU173535 other upstream 1026652 23103467 ~ 23120688 (-) True G137996

Expression Profile