RNA id: TU173350


Basic Information

Item Value
RNA id TU173350
length 348
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G137842
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 22127945 ~ 22128292 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcctaatctcagctcgttacctatataaaagacacctgtccacagaagcaaacTCTCcaaagaccaaagagctgtccaagaatgtcagggacaagattgtagacctacacaaggctggaatgggctacaagaccatcgccaagcagcttggtgagaaggtgacaatagttggtgcgattattcgcaaatggaagaaacacaaaataactgtcagtctccctcggtctggggctccatgcaagatctcacctcgtggagtttcaatgatcatgagaacggtgaggaatcagcccagaactacacaggaggatcttgttaggattgttttgttgttatactgtctctcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173331 lncRNA downstream 51130 22075685 ~ 22076815 (-) True G137828
TU173230 lncRNA downstream 440681 21687030 ~ 21687264 (-) True G137742
TU173220 lncRNA downstream 470203 21650763 ~ 21657742 (-) True G137733
TU173193 lncRNA downstream 701700 21425171 ~ 21426245 (-) True G137709
TU173196 lncRNA downstream 763021 21364292 ~ 21364924 (-) True G137711
TU173355 lncRNA upstream 52539 22180831 ~ 22181039 (-) True G137847
TU173385 lncRNA upstream 180149 22308441 ~ 22326347 (-) True G137870
TU173460 lncRNA upstream 595685 22723977 ~ 22724234 (-) True G137934
TU173467 lncRNA upstream 642632 22770924 ~ 22771248 (-) True G137941
TU173470 lncRNA upstream 656445 22784737 ~ 22784943 (-) True G137944
AMCG00012566 mRNA downstream 7850 22104669 ~ 22120095 (-) False AMCG00012566
AMCG00012564 mRNA downstream 45216 22078741 ~ 22082729 (-) False AMCG00012564
AMCG00012563 mRNA downstream 88711 22027618 ~ 22039234 (-) True AMCG00012563
AMCG00012562 mRNA downstream 387573 21738956 ~ 21740372 (-) True AMCG00012562
AMCG00012561 mRNA downstream 423977 21700051 ~ 21703968 (-) True AMCG00012561
AMCG00012565 mRNA upstream 24127 22152419 ~ 22165738 (-) True AMCG00012565
AMCG00012572 mRNA upstream 459848 22588140 ~ 22601168 (-) True AMCG00012572
AMCG00012574 mRNA upstream 473886 22602178 ~ 22608156 (-) True AMCG00012574
AMCG00012573 mRNA upstream 503651 22631943 ~ 22640196 (-) True AMCG00012573
AMCG00012575 mRNA upstream 591046 22719338 ~ 22777684 (-) True AMCG00012575
TU173344 other downstream 7389 22103653 ~ 22120556 (-) True AMCG00012566
TU173345 other downstream 39476 22078173 ~ 22088469 (-) True AMCG00012564
TU173346 other downstream 39476 22078173 ~ 22088469 (-) False AMCG00012564
TU173202 other downstream 509175 21433664 ~ 21618770 (-) True AMCG00012559
TU173211 other downstream 625746 21496679 ~ 21502199 (-) True AMCG00012556
TU173508 other upstream 793591 22921883 ~ 23049378 (-) True G137974
TU173535 other upstream 975175 23103467 ~ 23120688 (-) True G137996
TU173691 other upstream 1645211 23773503 ~ 23773998 (-) False AMCG00012594
TU173837 other upstream 2106212 24234504 ~ 24234867 (-) True G138207

Expression Profile