RNA id: TU173477


Basic Information

Item Value
RNA id TU173477
length 440
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G137951
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 22921189 ~ 22922372 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACTCCTTTGtcgccttggctgtgtgttttgggtcattgtcatgctggaatacccatccacgacccattttcaatgccctggctgagggaaggaggttctcacccaagatttgacggtacatggccccgtccatcgtccctttgatgcggtgcagttgtcctgtccccttagcagaaaaacacccccaaagcataatgtttccacctccatgtttgacagtggggatggtgttcttggggtcattcctcctcctccaaacacggcgagttgagttgatgccaaagagcttgattttggactcatctgaccacaacgctttcacccagttctcctctgaatcattcagatgttcattgacaaacttcaggccatggtggagagtttggaatctgattgattgattgcttctgtggacagttgtcttttatacaggtaacga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173364 lncRNA upstream 595159 22308413 ~ 22326350 (+) True G137851
TU173330 lncRNA upstream 844639 22075843 ~ 22076870 (+) True G137827
TU173317 lncRNA upstream 915831 22005381 ~ 22005678 (+) True G137814
TU173251 lncRNA upstream 963155 21836242 ~ 21958354 (+) True G137761
TU173523 lncRNA downstream 135750 23058086 ~ 23058391 (+) True G137984
TU173550 lncRNA downstream 240655 23162991 ~ 23163619 (+) True G138010
TU173574 lncRNA downstream 353328 23275664 ~ 23275950 (+) True G138034
TU173588 lncRNA downstream 876270 23798606 ~ 23843211 (+) False G138042
TU173617 lncRNA downstream 882291 23804627 ~ 23843211 (+) False G138042
AMCG00012579 mRNA upstream 9853 22880359 ~ 22911656 (+) True AMCG00012579
AMCG00012581 mRNA upstream 58686 22860079 ~ 22862823 (+) True AMCG00012581
AMCG00012576 mRNA upstream 252165 22665481 ~ 22669344 (+) True AMCG00012576
AMCG00012577 mRNA upstream 333304 22585701 ~ 22588205 (+) True AMCG00012577
AMCG00012571 mRNA upstream 465948 22452135 ~ 22455561 (+) True AMCG00012571
AMCG00012580 mRNA downstream 13934 22936270 ~ 22950900 (+) True AMCG00012580
AMCG00012578 mRNA downstream 38862 22961198 ~ 22966195 (+) True AMCG00012578
AMCG00012583 mRNA downstream 120152 23042488 ~ 23092426 (+) True AMCG00012583
AMCG00012585 mRNA downstream 264551 23186887 ~ 23230915 (+) True AMCG00012585
AMCG00012586 mRNA downstream 495265 23417601 ~ 23422278 (+) True AMCG00012586
TU173480 other upstream 33453 22887538 ~ 22888056 (+) False AMCG00012579
TU173473 other upstream 103051 22817953 ~ 22818458 (+) True G137947
TU173418 other upstream 355403 22565424 ~ 22566106 (+) True G137899
TU173274 other upstream 963351 21932295 ~ 21958158 (+) True G137775
TU173256 other upstream 1044967 21854706 ~ 21876542 (+) False G137764
TU173653 other downstream 787182 23709518 ~ 23742591 (+) False AMCG00012593

Expression Profile