RNA id: TU173525


Basic Information

Item Value
RNA id TU173525
length 339
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G137986
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 23066131 ~ 23066469 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttaatctcagacagacagcacattcgtttttctaggtctatggtgttgttaggatttactgacagatataattgtgtgtcatctgcgtaactgtgaaagttaacaTTATGTCgtcgaatgatatcacctaaaaggagcatgtacaatgaaaaagtataggtccgaggactgagccctgtgggactccgtacttaacctcagttaaatttgagtggttctcgttaatctgtacatattggagtctgtttgagagatatgatttaaaccatgaaagcACATTGCGAGATAGGCCAATAcggttttctaagcggtgtaacaagattttgtggtcgattgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173515 lncRNA downstream 36909 23004010 ~ 23029222 (-) False G137981
TU173518 lncRNA downstream 36909 23004010 ~ 23029222 (-) False G137981
TU173519 lncRNA downstream 36909 23004010 ~ 23029222 (-) True G137981
TU173470 lncRNA downstream 281188 22784737 ~ 22784943 (-) True G137944
TU173467 lncRNA downstream 294883 22770924 ~ 22771248 (-) True G137941
TU173551 lncRNA upstream 96633 23163102 ~ 23163391 (-) True G138011
TU173682 lncRNA upstream 630286 23696755 ~ 23764819 (-) True G138085
TU173723 lncRNA upstream 829571 23896040 ~ 23935478 (-) True G138120
TU173754 lncRNA upstream 936809 24003278 ~ 24085235 (-) True G138142
TU173792 lncRNA upstream 1033700 24100169 ~ 24139567 (-) True G138176
AMCG00012582 mRNA downstream 60897 22881459 ~ 23005234 (-) True AMCG00012582
AMCG00012575 mRNA downstream 288447 22719338 ~ 22777684 (-) True AMCG00012575
AMCG00012573 mRNA downstream 425935 22631943 ~ 22640196 (-) True AMCG00012573
AMCG00012574 mRNA downstream 457975 22602178 ~ 22608156 (-) True AMCG00012574
AMCG00012572 mRNA downstream 464963 22588140 ~ 22601168 (-) True AMCG00012572
AMCG00012584 mRNA upstream 114735 23181204 ~ 23185663 (-) True AMCG00012584
AMCG00012587 mRNA upstream 190814 23257283 ~ 23488884 (-) True AMCG00012587
AMCG00012590 mRNA upstream 467126 23533595 ~ 23598058 (-) True AMCG00012590
AMCG00012594 mRNA upstream 707008 23773477 ~ 23776880 (-) True AMCG00012594
AMCG00012597 mRNA upstream 886663 23953132 ~ 23976623 (-) True AMCG00012597
TU173508 other downstream 16753 22921883 ~ 23049378 (-) True G137974
TU173344 other downstream 945575 22103653 ~ 22120556 (-) True AMCG00012566
TU173345 other downstream 977662 22078173 ~ 22088469 (-) True AMCG00012564
TU173346 other downstream 977662 22078173 ~ 22088469 (-) False AMCG00012564
TU173202 other downstream 1447361 21433664 ~ 21618770 (-) True AMCG00012559
TU173535 other upstream 36998 23103467 ~ 23120688 (-) True G137996
TU173691 other upstream 707034 23773503 ~ 23773998 (-) False AMCG00012594
TU173837 other upstream 1168035 24234504 ~ 24234867 (-) True G138207

Expression Profile