RNA id: TU173535


Basic Information

Item Value
RNA id TU173535
length 346
RNA type TUCP
GC content 0.45
exon number 2
gene id G137996
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 23103467 ~ 23120688 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgaaaacagtggATGCCCTACCCAACATGCTcaagagaatgctgtataaaGATCCACGGCCTGGTGTACCTGCTTTTACAGCTGTTCAAAAAGTTCTCCAGAGTTCTTTTGGAAACACCATCCCTATCATGACCAAGTCCAATTTCTACACTGTGCTAGACAAAATAGCAATGATCTGTGTTGCTGCCCTTGCAAATAAGCAGGTTGAGGGTGTTGCttgtgcagtacagttcagctgtAGGAGTTGGGCATGGGAGATCACTGGTCACCCGTGTCAGTATCTAAGCTCACTGTCTACTTCTGACCTGAtaccatgttgtcatgtttagattggtcacaataaaa

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173525 lncRNA downstream 36998 23066131 ~ 23066469 (-) True G137986
TU173515 lncRNA downstream 74245 23004010 ~ 23029222 (-) False G137981
TU173518 lncRNA downstream 74245 23004010 ~ 23029222 (-) False G137981
TU173519 lncRNA downstream 74245 23004010 ~ 23029222 (-) True G137981
TU173470 lncRNA downstream 318524 22784737 ~ 22784943 (-) True G137944
TU173551 lncRNA upstream 42414 23163102 ~ 23163391 (-) True G138011
TU173682 lncRNA upstream 576067 23696755 ~ 23764819 (-) True G138085
TU173723 lncRNA upstream 775352 23896040 ~ 23935478 (-) True G138120
TU173754 lncRNA upstream 882590 24003278 ~ 24085235 (-) True G138142
TU173792 lncRNA upstream 979481 24100169 ~ 24139567 (-) True G138176
AMCG00012582 mRNA downstream 98233 22881459 ~ 23005234 (-) True AMCG00012582
AMCG00012575 mRNA downstream 325783 22719338 ~ 22777684 (-) True AMCG00012575
AMCG00012573 mRNA downstream 463271 22631943 ~ 22640196 (-) True AMCG00012573
AMCG00012574 mRNA downstream 495311 22602178 ~ 22608156 (-) True AMCG00012574
AMCG00012572 mRNA downstream 502299 22588140 ~ 22601168 (-) True AMCG00012572
AMCG00012584 mRNA upstream 60516 23181204 ~ 23185663 (-) True AMCG00012584
AMCG00012587 mRNA upstream 136595 23257283 ~ 23488884 (-) True AMCG00012587
AMCG00012590 mRNA upstream 412907 23533595 ~ 23598058 (-) True AMCG00012590
AMCG00012594 mRNA upstream 652789 23773477 ~ 23776880 (-) True AMCG00012594
AMCG00012597 mRNA upstream 832444 23953132 ~ 23976623 (-) True AMCG00012597
TU173508 other downstream 54089 22921883 ~ 23049378 (-) True G137974
TU173344 other downstream 982911 22103653 ~ 22120556 (-) True AMCG00012566
TU173345 other downstream 1014998 22078173 ~ 22088469 (-) True AMCG00012564
TU173346 other downstream 1014998 22078173 ~ 22088469 (-) False AMCG00012564
TU173202 other downstream 1484697 21433664 ~ 21618770 (-) True AMCG00012559
TU173691 other upstream 652815 23773503 ~ 23773998 (-) False AMCG00012594
TU173837 other upstream 1113816 24234504 ~ 24234867 (-) True G138207

Expression Profile