RNA id: TU173550


Basic Information

Item Value
RNA id TU173550
length 629
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G138010
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 23162991 ~ 23163619 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aGAGCTTTTACTGCAAAACCAGCCGCTATGATCCGTCCTCTGatgaggagcagcgactgtgggtttggattgtgtttctgttaaaaACGGAGACACGAAACACTACAGCGACACAGCCTGAGTGGACaggactttgtgtctgttttattatttgtgctttacatgattttaaacagcgtaataaatacatgtttctgttaaagatattaggaagagctaaacgtgtagacatcattatattcagacaagcatgttcacataaaaatacatttccatgtgcaacaataatactaaatagcaaatatgtattgttattattatcgtcatcatttgtgctagtatatatgtattttaaacggcacagcgtgactcccttaacttattactcttactacagatttgtaagtgcaaacaatactttttgccgtattatttataatgtacttatcagacaTTCTTAACCAGGGCAcgttacagctgaaacaaaatacacacgtttcacgattaatcatccaaaTGCAATATAGCAtcttataattgaactaaagtgtgcacgtctcagtcatggcgtttatggacgcatttattaatcccgtccttaatgttttagagggaaacccagatctgct

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173523 lncRNA upstream 104600 23058086 ~ 23058391 (+) True G137984
TU173479 lncRNA upstream 240619 22921189 ~ 22922372 (+) True G137951
TU173477 lncRNA upstream 240655 22921509 ~ 22922336 (+) False G137951
TU173364 lncRNA upstream 836641 22308413 ~ 22326350 (+) True G137851
TU173330 lncRNA upstream 1086121 22075843 ~ 22076870 (+) True G137827
TU173574 lncRNA downstream 112045 23275664 ~ 23275950 (+) True G138034
TU173588 lncRNA downstream 634987 23798606 ~ 23843211 (+) False G138042
TU173617 lncRNA downstream 641008 23804627 ~ 23843211 (+) False G138042
TU173613 lncRNA downstream 643046 23806665 ~ 23843211 (+) True G138042
TU173596 lncRNA downstream 657436 23821055 ~ 23843211 (+) False G138042
AMCG00012583 mRNA upstream 70565 23042488 ~ 23092426 (+) True AMCG00012583
AMCG00012578 mRNA upstream 196796 22961198 ~ 22966195 (+) True AMCG00012578
AMCG00012580 mRNA upstream 212091 22936270 ~ 22950900 (+) True AMCG00012580
AMCG00012579 mRNA upstream 251335 22880359 ~ 22911656 (+) True AMCG00012579
AMCG00012581 mRNA upstream 300168 22860079 ~ 22862823 (+) True AMCG00012581
AMCG00012585 mRNA downstream 23268 23186887 ~ 23230915 (+) True AMCG00012585
AMCG00012586 mRNA downstream 253982 23417601 ~ 23422278 (+) True AMCG00012586
AMCG00012588 mRNA downstream 321999 23485618 ~ 23516382 (+) True AMCG00012588
AMCG00012589 mRNA downstream 390441 23554060 ~ 23561816 (+) True AMCG00012589
AMCG00012591 mRNA downstream 464841 23628460 ~ 23649841 (+) True AMCG00012591
TU173480 other upstream 274935 22887538 ~ 22888056 (+) False AMCG00012579
TU173473 other upstream 344533 22817953 ~ 22818458 (+) True G137947
TU173418 other upstream 596885 22565424 ~ 22566106 (+) True G137899
TU173274 other upstream 1204833 21932295 ~ 21958158 (+) True G137775
TU173256 other upstream 1286449 21854706 ~ 21876542 (+) False G137764
TU173653 other downstream 545899 23709518 ~ 23742591 (+) False AMCG00012593

Expression Profile