RNA id: TU173588


Basic Information

Item Value
RNA id TU173588
length 1659
lncRNA type inter_gene
GC content 0.31
exon number 5
gene id G138042
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 23798606 ~ 23843211 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGGTGGTGGAGCTGGGAAGCTCATATTTGGAGAAGGGACAAAGCTAATTGTAGAAAAAAaaaAGAAGTCAAACCCATCTGTTTATATCTTGAAGGCTAATGATGGTCCTGCTGCTTGTTTGGTCACAGACTTCAGTTCATACAATACCACTGTTACAATTAATAACATCACAGTTAAATCTGAACCCaccataataaaaaatgatgataCCTACAGTATGGTATTGATTATGGGCAATACCACAGACAAGTGTGCCATACCATCTACAAAGTTAAACAAGAATTTAACAAGTGATACATTTACTGACACATGTGTTCCTGACTTAAATGTTGAATTTGAAACAGatGAAAAGATGAACTTCTTGTCTTTGACTGTCCTGGGGTTGAGAATTTTGTTCCTAAAAAGCATTGTGTTCAATGTGATTATGACTCTTCGGGTGTGGATGAGTTAGGGAAGTAGAAATTTGTGAATGGAATACAAGTAGGAGTCAAGACGAATATTGCAAGAAAAAAGACTTAGACTTGAGTAGTGTAACATGCTTAAGCCtttgctttaaatttaaatatgtatataagaTGTATTTCCCATAGAATTAATCTAAGAATGTTCCCTTGATTGATAGCATATTCTGTGATTCATGATCAAAATGCAATCCACAATCATACAATTAAAAcgcattttcataaaaaatatttttgctcatggccttttttcagaaatgggaaaaacattgtattacatttttatatttgtactgctttaaacaaaaactttttttttttaaataatgtcctgttttgtttcttaggttttgttttgttagcaaAAGTAGCTTTCTGTTTCTCACACTTGTATGTCCTTGCCATAATAAAATGAGCAGCTTTGATATTACAGATAATTTGTACTATAATAAAATGCCACAAATTGCTAATCAGATTTGCTAATAATATAAAGTATGTTAAGTATGTTATCTGAGTTTGCAATTGGCAATAAAGGAAAATCGCTGAatcaaatttgttttataatcatTAGAAATCatggtatattattatatatataattatatattattacacattttaagcCAAACATAGTTAAATAAGTAATGTATTCAGTAATCTGATTTTACATtgacattgtacagcattaGTCACTTATAAATGTTGAGGGTGTTCTCATTTTTATATGGCAggattttgtatgtatgttttatacagtatttatcaGTTAAACTCACTGAAGATGAGGTTTAACAAAACTCACAAGGCCTTCTcttaccaaataaatacatttgtgtcaaTCAAGTACCCTGTAAATTACCATAGGAGATAGcctgttttaaattattggaTTAACTGAATCTGGCTAATTAGCCTGAATTAGTTCAAAAAGGTACAAGGAACAGGGCCCAGAAGTCTGCCTCATATACATCTATAGTTAATCTAAAACAATTACAGCTTTAGTGAGACTTTATGCATCAGCCTCTGTTAATGTAAACCCTGTAAATCTTAATTGATTGGCTTAATATTTGGATGTATaaccttgttttgaaattaaaaaacaatcttaattGCTGTActgcaataaaatgtttaaatcacttcctgttgtttttgttgtatttcatgCACTTTTTAACTTGCTATGTTATTCTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173574 lncRNA upstream 522656 23275664 ~ 23275950 (+) True G138034
TU173550 lncRNA upstream 634987 23162991 ~ 23163619 (+) True G138010
TU173523 lncRNA upstream 740215 23058086 ~ 23058391 (+) True G137984
TU173479 lncRNA upstream 876234 22921189 ~ 22922372 (+) True G137951
TU173477 lncRNA upstream 876270 22921509 ~ 22922336 (+) False G137951
TU173721 lncRNA downstream 76865 23920076 ~ 23921869 (+) True G138118
TU173839 lncRNA downstream 393451 24236662 ~ 24236977 (+) True G138209
TU173842 lncRNA downstream 397928 24241139 ~ 24241424 (+) True G138212
AMCG00012593 mRNA upstream 88536 23697424 ~ 23710070 (+) True AMCG00012593
AMCG00012592 mRNA upstream 109065 23663228 ~ 23689541 (+) True AMCG00012592
AMCG00012591 mRNA upstream 148765 23628460 ~ 23649841 (+) True AMCG00012591
AMCG00012589 mRNA upstream 236790 23554060 ~ 23561816 (+) True AMCG00012589
AMCG00012588 mRNA upstream 282224 23485618 ~ 23516382 (+) True AMCG00012588
AMCG00012595 mRNA downstream 16618 23859829 ~ 23899337 (+) True AMCG00012595
AMCG00012596 mRNA downstream 108981 23952192 ~ 23976569 (+) True AMCG00012596
AMCG00012599 mRNA downstream 200744 24043955 ~ 24069451 (+) True AMCG00012599
AMCG00012598 mRNA downstream 373156 24216367 ~ 24222350 (+) True AMCG00012598
TU173653 other upstream 56015 23709518 ~ 23742591 (+) False AMCG00012593
TU173480 other upstream 910550 22887538 ~ 22888056 (+) False AMCG00012579
TU173473 other upstream 980148 22817953 ~ 22818458 (+) True G137947
TU173418 other upstream 1232500 22565424 ~ 22566106 (+) True G137899
TU173274 other upstream 1840448 21932295 ~ 21958158 (+) True G137775

Expression Profile