RNA id: TU173842


Basic Information

Item Value
RNA id TU173842
length 201
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G138212
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 24241139 ~ 24241424 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttcAATTTCTAATGCCAGCCACATTTCTTAGAAGTCCTCCGCTCTCTCTTCCtggcctgctctgctctgtctctACGGCGCTCCAGGGACCCCAGTGAGGGCAGGTCTTTACGGAAGATCTCCTCCTTAATATCGTCTTCATCACACATTGTGTTAAAGCTTCTATACTGTGTCTCCAGTCTGTGGGCCAGCACATACCCG

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173839 lncRNA upstream 4162 24236662 ~ 24236977 (+) True G138209
TU173721 lncRNA upstream 319270 23920076 ~ 23921869 (+) True G138118
TU173617 lncRNA upstream 397928 23804627 ~ 23843211 (+) False G138042
AMCG00012598 mRNA upstream 18789 24216367 ~ 24222350 (+) True AMCG00012598
AMCG00012599 mRNA upstream 171688 24043955 ~ 24069451 (+) True AMCG00012599
AMCG00012596 mRNA upstream 264570 23952192 ~ 23976569 (+) True AMCG00012596
AMCG00012595 mRNA upstream 341802 23859829 ~ 23899337 (+) True AMCG00012595
AMCG00012593 mRNA upstream 531069 23697424 ~ 23710070 (+) True AMCG00012593
TU173653 other upstream 498548 23709518 ~ 23742591 (+) False AMCG00012593
TU173480 other upstream 1353083 22887538 ~ 22888056 (+) False AMCG00012579
TU173473 other upstream 1422681 22817953 ~ 22818458 (+) True G137947
TU173418 other upstream 1675033 22565424 ~ 22566106 (+) True G137899
TU173274 other upstream 2282981 21932295 ~ 21958158 (+) True G137775

Expression Profile