RNA id: TCONS_00010926


Basic Information

Item Value
RNA id TCONS_00010926
length 1825
lncRNA type intronic
GC content 0.36
exon number 1
gene id XLOC_004695
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 22017946 ~ 22019770 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTGCTCGCCTCACGAGCGACCTGTTGCTCCGCCTCACGCCCAGCCTGTTGATCGGTGGACGGGTAAGCGCGCATGGCATCGGAAGGAGCTCGAAAAGTATAAGGTAACTAATGAAACTAACGTGAAGCATGTTTGATGAccactttataaacacaacacctaggataatttaggagctttttattgtaataaaatgccttttgaatgacacagatttttatgttggctaggtgatgacagtaagtaacgtTACTGTGATTTGTGATCTTTCTGGGGTGTTAACTGTAAAGCAGTAAGTAGTATTTTTACTCTTGTATTTCTTAATGTTGTTCATGGATTTTTGTGACAATACTTTGATGCATAAGTGTTGAATTCAGcttctaacaatgttttttttaatcaaaatatatacaatacttGTCCTGCTCtgcatgtacattttgtttagctgtacatctgtacattgaatagcaaatgttattaatttactatgagcattttacattctagACGTGATTTGAGCTATCTTTAATTAATCCTGTATGTAAGGGTCGTTTCATGCTAACGGAAATGTCTGAGCTAAGGCTAATTCCAACCTAATCATCTTcaactgcaaaaagaaaaagtttgaccACCGTTTTATGTGACACCCtggataattattatcatttaggagtatttttgtgatatagtgacttttggctaacatgatctttttttacttaattttgcttAAACGCTTTTATCTGTTATTCTTTTTTCAGGTGGATAATTGCGtgaaaatcaaactaaaagaatGCAATCTTGAGGAGTTAATCACCACATttgaaggtatgtaataatattttacttggttcattgtaatcattagggctgcccttgtctaaacatttgtctggttgacttgtgatgttcatttgaagcattagttgaataattacagatttattaataaaccatttattcattaattcattttctttttgactcagtccctttattaatctggggtcgccacagcggaatgaaccgccaacttatccagcatattttttacacagcggattcatgcagcatacattgactttgccagtgtggacttttttttctgcaactagtgggtagcacattcgcctcatagcaacaaggtcacttgatcgatccttggctgggtcaataggcctttctgtgtgaagtttgcatgttctccccgtgttcgcgtgggtttcctccaggtgccccggtttccaaagacgtggtaaaggtgaattaagtagactaaattgtcaatggtgtatgtgtgtgaatgagtatttgtttcccagtgatgggttgcagctgaaagggcattcgctgcataaaacttatgctggatatgttggtggttcattccattgtggttaccccagattaataaagcgacaaagctaaaaagaaaatgaatgaatgaataataaatttttagttgACTAATGGTTATTCAATTATTAGGGGGCAGCCCTAGTAATCATTAGCCACTTCAACACTTTAAACTGAGAGATTAAACTCAAATGCCAATTTGTCTTTGTctggttatttttaaaaatctgctgttcatgcaaccagtgacattctcttgttttatttttagcacagGAGCGAACCTTTCCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGGTAAGGATTCAATTAAAGGTTTCTCGATGcataatgatgcatttaatgcataatgattgtcttagttattttattaacaatgaaaatgttatttttatgtttgttattagggtggcatgggggcgcagtgggtagtgctg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010924 lncRNA upstream 218550 21757817 ~ 21799396 (+) False XLOC_004694
TCONS_00010925 lncRNA upstream 218550 21790979 ~ 21799396 (+) False XLOC_004694
TCONS_00010922 lncRNA upstream 910959 20806915 ~ 21106987 (+) False XLOC_004689
TCONS_00009291 lncRNA upstream 1131464 20806897 ~ 20886482 (+) False XLOC_004689
TCONS_00010923 lncRNA upstream 1131464 20807009 ~ 20886482 (+) True XLOC_004689
TCONS_00010734 lncRNA downstream 239192 22258962 ~ 22259398 (+) False XLOC_004696
TCONS_00010927 lncRNA downstream 270210 22289980 ~ 22304841 (+) True XLOC_004696
TCONS_00009303 lncRNA downstream 404183 22423953 ~ 22427055 (+) False XLOC_004697
TCONS_00010735 lncRNA downstream 598618 22618388 ~ 22619122 (+) True XLOC_004701
TCONS_00010928 lncRNA downstream 1017677 23037447 ~ 23040091 (+) True XLOC_004707
TCONS_00009298 mRNA upstream 269938 21697540 ~ 21748008 (+) True XLOC_004693
TCONS_00009297 mRNA upstream 329859 21684239 ~ 21688087 (+) True XLOC_004692
TCONS_00009296 mRNA upstream 468799 21525496 ~ 21549147 (+) True XLOC_004690
TCONS_00009293 mRNA upstream 468812 21299338 ~ 21549134 (+) False XLOC_004690
TCONS_00009300 mRNA downstream 239192 22258962 ~ 22304841 (+) False XLOC_004696
TCONS_00009301 mRNA downstream 384338 22404108 ~ 22445061 (+) False XLOC_004697
TCONS_00009302 mRNA downstream 388082 22407852 ~ 22444387 (+) False XLOC_004697
TCONS_00009305 mRNA downstream 540297 22560067 ~ 22573297 (+) True XLOC_004698
TCONS_00009306 mRNA downstream 556634 22576404 ~ 22604311 (+) False XLOC_004699
TCONS_00009299 other upstream 223830 21794002 ~ 21794116 (+) True XLOC_004694
TCONS_00009295 other upstream 580488 21437346 ~ 21437458 (+) True XLOC_004691
TCONS_00009286 other upstream 1325933 20691358 ~ 20692013 (+) False XLOC_004688
TCONS_00009270 other upstream 1518866 20498983 ~ 20499080 (+) True XLOC_004679
TCONS_00009249 other upstream 2113531 19866998 ~ 19904415 (+) False XLOC_004671
TCONS_00009304 other downstream 423859 22443629 ~ 22444772 (+) True XLOC_004697
TCONS_00009307 other downstream 558634 22578404 ~ 22578530 (+) True XLOC_004700
TCONS_00009313 other downstream 638153 22657923 ~ 22661380 (+) False XLOC_004703
TCONS_00009319 other downstream 658183 22677953 ~ 22745783 (+) False XLOC_004704
TCONS_00009330 other downstream 901707 22921477 ~ 22932021 (+) False XLOC_004706

Expression Profile

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