RNA id: AMCG00012623


Basic Information

Item Value
RNA id AMCG00012623
length 777
RNA type mRNA
GC content 0.54
exon number 6
gene id AMCG00012623
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 281594 ~ 298125 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACAACGAGAACGAGACGGCTCTGCACTGTGCCGCCCAGTACGGCCACTCGGAGGTGGTGGGGGTTCTGCTGGAGGAGCTGACTGACCCCACAATGAGGAACAACAAGAGTGAGACTCCCTTGGACCTGGCAGCGCTGTACGGCCGGCTTCAGGTGGTCAAGATGCTTGTGAATGCCCACCCCAACCTCATGAGTTGCAACACCAAGAAGCACACCCCCCTGCACCTGGCTGCGCGCAACGGGCACAAGGCAGCTGTTGAGGTGCTCCTGGAGGCGGGCATGGACTTCAACTGCCAGaCGGAGAAAGGGAGTGCACTACATGAGGCAGCCCTGTTTGGGAAGATGGATGTTGTGCGGATTCTGCTGGAGACAGGAATTGATGCCAATTTAATGGACTGCCAAGGACGAACTGCCCTGGATATACTGAAGGAGCACCCAGCACAGAAATCACAGCAAATCACAGCGCTCATTCAAGAGTACATGGCAGAaaagctggagagagagattgtggaGGAGCCGGTCAGACAGTGTCCGGTCCCGACGCCCCGCACCTCCGTCTCCTCCCCTGCCGCCTCGCCATCCCATAAAACCAAAAATGAAACGGTGACAGGAGAGCTgtcaaaattattaaatgaaatcaaaatgtgcAAAGACAAAGAGTTCTCCTTTGAAGATCTGTGCCAAACGATCTCGTCGCACTCAATGGAGAGCTTTGGCAGTGGCAAGCTGTCGGATGAAGACAGGAATGGCAGTCTGACAAAGACAAACAAGCAATAA

Function

GO:

id name namespace
GO:0008454 alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47758 lncRNA upstream 225622 523747 ~ 539591 (-) False AMCG00012628
TU47775 lncRNA upstream 298483 596608 ~ 596818 (-) True G38305
TU47832 lncRNA upstream 538986 837111 ~ 840487 (-) True G38355
TU47918 lncRNA upstream 1280830 1578955 ~ 1583433 (-) False AMCG00012646
TU47965 lncRNA upstream 1586504 1884629 ~ 1887591 (-) True G38472
AMCG00012626 mRNA downstream 85993 152662 ~ 195601 (-) True AMCG00012626
AMCG00012625 mRNA downstream 133489 124039 ~ 148105 (-) True AMCG00012625
AMCG00012621 mRNA downstream 266185 8500 ~ 15409 (-) True AMCG00012621
AMCG00012624 mRNA upstream 122108 420233 ~ 450576 (-) True AMCG00012624
AMCG00012628 mRNA upstream 216097 514222 ~ 538806 (-) False AMCG00012628
AMCG00012632 mRNA upstream 259704 557829 ~ 574372 (-) True AMCG00012632
AMCG00012631 mRNA upstream 291102 589227 ~ 590653 (-) True AMCG00012631
AMCG00012630 mRNA upstream 301730 599855 ~ 613207 (-) True AMCG00012630
TU47757 other upstream 225622 523747 ~ 539591 (-) True AMCG00012628
TU47949 other upstream 1478729 1776854 ~ 1777221 (-) True G38458
TU47984 other upstream 1885760 2183885 ~ 2184163 (-) True G38490
TU49217 other upstream 6157596 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 8814316 9112441 ~ 9113076 (-) False AMCG00012829

Expression Profile