RNA id: TU47758


Basic Information

Item Value
RNA id TU47758
length 1343
lncRNA type sense_over
GC content 0.35
exon number 4
gene id AMCG00012628
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 514222 ~ 539591 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGAAGACGTGGCGGCTGCAACAACAGCAAGCTGCTTTCGGAAGAGAGTTGGGCTTTCTTTAAGTGTGGACAGTTGTTGCCTGTGTAGTTTTTGGTCAATCCACTACTGCAAAAATGATCTCCCTAACGGATTCACAGAaaATCGGAATGGGACTAACAGGCTTTggtgtgtttttcctgtttttcgGAATGATCCTGTTCTTTGACAAAGCTCTCCTAGCTATAGGAAATGGGGTTCTTTCCTGTGGCTGTTGGGTTCATCAGAAGAATTCCAGTTCTTGGATCATTATTGAATTTGCCAGGAATCAGAGGGtttgtgGATAAAGTTGGAGAGAGCAACAACATGGTATAACAGTGacttcaagttttttttttttttttttttttttttttttttttttttaatcgctttattatatttataaggGTTTCCTAAAGTTACTTTACCCCCCACTTTACCCTGTCTGATGTTACTAATGAGGTAAAtccaggaaatatattttacctttgttttcaatttttaaaacaaatcaaatctgctttatttatttcttctttgatCCATGTTGCAAAAATCAAGAAGAAGCCGGGAAAGACTACATCGTGTCAGCTTTTGTAGTGCAGCGGGTGGAAGTTCTCCAGTCTCAAATAATCAGGGGGACATAGTTACTTTAATGGAGCTTAAATAGCACAATGCGCAGACAGTGTATACTGTTACAAGATCCTTTGCTATATGTGTCCTttctaaacatacattttttgtggAAGATATAGTCTCTGAAAGAATTAAATGTACCAGGCTGATCCTATGAGTTAGAAGTTCCTCGGAATGCAGTTTCTGAAAGCTTCCGTCAACCATTTCACTTTATGCCGTTGTACCAAGCTTTCATTTGGAGATAATGGCATTGTGGGTTCTGTTACAAAGATAATCGGCTGTGCTACATTAATGTGCCTGGACGTTTGCTTTCCTTTGGAGAAAGCTTAAGTGCTGTAAaagaaatttatattttatttagttttgttttttttttgtttagttttgttctggaAAACTaaaaggccaaaaaaaaaatgaatgaaagaaaaaaaaaaaaaatactccttTGTATTAGAACCTTCAATGTATCTAGTGGCGTAAGGAGGTTGGactgcattatattatttttaaaagtaaaattttTCAGTCACTTTTACCTGTGTAAAGTATTGAagacaaaaatcaacaacaatttAACAAAGTATAATGTTTTGCTGTAAGAAActtttgtaaatacacatttgaaatacGAAACttgttatgtgttttttaagaCAATCCCAATAAACACTACTGTGGCCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47775 lncRNA upstream 57017 596608 ~ 596818 (-) True G38305
TU47832 lncRNA upstream 297520 837111 ~ 840487 (-) True G38355
TU47918 lncRNA upstream 1039364 1578955 ~ 1583433 (-) False AMCG00012646
TU47965 lncRNA upstream 1345038 1884629 ~ 1887591 (-) True G38472
TU47966 lncRNA upstream 1361169 1900760 ~ 1901924 (-) True G38473
AMCG00012624 mRNA downstream 73171 420233 ~ 450576 (-) True AMCG00012624
AMCG00012623 mRNA downstream 225622 281594 ~ 298125 (-) True AMCG00012623
AMCG00012626 mRNA downstream 328146 152662 ~ 195601 (-) True AMCG00012626
AMCG00012625 mRNA downstream 375642 124039 ~ 148105 (-) True AMCG00012625
AMCG00012621 mRNA downstream 508338 8500 ~ 15409 (-) True AMCG00012621
AMCG00012632 mRNA upstream 18238 557829 ~ 574372 (-) True AMCG00012632
AMCG00012631 mRNA upstream 49636 589227 ~ 590653 (-) True AMCG00012631
AMCG00012630 mRNA upstream 60264 599855 ~ 613207 (-) True AMCG00012630
AMCG00012634 mRNA upstream 205744 745335 ~ 751549 (-) True AMCG00012634
AMCG00012637 mRNA upstream 227414 767005 ~ 792382 (-) True AMCG00012637
TU47949 other upstream 1237263 1776854 ~ 1777221 (-) True G38458
TU47984 other upstream 1644294 2183885 ~ 2184163 (-) True G38490
TU49217 other upstream 5916130 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 8572850 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 11700805 12240396 ~ 12253443 (-) True AMCG00012888

Expression Profile