RNA id: AMCG00012637


Basic Information

Item Value
RNA id AMCG00012637
length 2131
RNA type mRNA
GC content 0.47
exon number 15
gene id AMCG00012637
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 767005 ~ 792382 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGTACTATTAAGTTACCGATTAGGGTCTTatcgttttctttttaagataaTCTAGACAATGACTAACGTCGCTCTTACAAAAACGAAATACCTGCATCAACTAGGGAGACCAGTGTACGGACCACAGGGACTGATTGCAAGTTATCCTCATGGGGGTCGAAAACAACAAGATGTCGGAAGAAAAGGCAGTAAAAGGGCAGTGCTGCTCCAAACTTAAGCTTTTCCTAGTATCCCTGTCTGTTGTCTACTTTGCCAAAGCACTGCAGGGAAGTTACATGAAGAGTTCAATCACCCAAATAGAGAGGTGCTTTGACATCCCCAGCTCTTTGATAGGAGTCATTGATGGGAGCTTTGAAATGGGTAATCTCTTGGTCATTGCCTTTGTCAGCCACTTTGGGGCAAAGCTTCACAGGCCCAGGTTGATAGGCATTGGCTGCCTGCTGATGTCTTTGAGCTCCTTCCTCACTGCCCTGCCTCATTTGTTCATGGGACAGTATCAGTATGAAACCTCCATAGCACATTCGTCCAACATAACTGCAAGTATTTCTCCCTGTCTCGCCAAACATTCTGAGGACCTGAGCAGTACCAGTGCACCAGCTGGCCCTAGACCAGACTGTGTTCAAGAAACTGGATCCTCCATGTGGGTGTATGTCTTCCTGGGAAACATGCTGCGTGGAATTGGAGAAACCCCTGTGATACCCTTGGGTGTATCCTACATTGATGACTTTGccagagaagaaaacacagcTTTTTACCTGTCTTGCATCCAGACAATTGGTATAATGGGCCCAATATTTGGGTTTCTCTTGGGGTCCCTATGTGCCAAGCTGTATGTGGATTTCGACTCTGTTAATTTAGATACCTTGACAATCAACTCCAAGGATGCACGATGGGTGGGCGCTTGGTGGCTGGGGTTCCTGGTATCTGGGGTGGTGATGCTCGTGGCTGGCATCCCTTTCTGGTTCTTGCCCAGGTCTATTCCCAAGCAAGGGAAGGCCAAGGGCAAAGATGAGCATTCCCAGGAACTGGTCAAGTTCATAGGGGAGGAAAAAAGTTATCAGAGTGCCAAAAATCCACAGACTGGcaaaatatttgacttagcAAAAGATTTTCTTCCTTCATTGAAAAAACTCTTCCACAATTCTGTGTTTTCCCTGATAATGTGTGTTTCCGTTATACAAGTCAATGCGTTTATGGGAATTATCACATTTATGCCAAAGTTCATGGAACAAATATATGGCCAGTCTGCCTCCAAGGCCACCTTCCTCATAGgTGTCCTGAATTTGCCTGCTGTTGCAGCTGGAATTTTCACTGGAGGTTTAATCCTGAAGAAATGCAAACTGAGTGTTATTGGGATTGCTAGGTTAGCAATTGGAGCCTCATTCACCTCTTTCCTGCTAATGCTTGTCTACTATGCACTGAACTGTGAGAACACACAAGTGGCTGGATTGACCATTTCATATGAAGGagtGAAACAAGTGTCATACCAGCAGCAGAGTCTGTTGTCTAAATGCAATACTGGGTGCTCCTGCTCTCTGAAGCACTGGGACCCTGTCTGTGCCCACAGTGGTGTAACATTCGTCTCTTCCTGCCTTGCTGGCTGCAGAACCTCCACTGGAACTGGGAAACAAATGGTGTTTTACAACTGCAGCTGCCTGGAGGCCGGGAACAGTTCGGCTATCCTGGGACAGTGTCCACGACCGGAGGACTGCGACACCATGTTCAAGTATTACATGTTCATCTCAGTTGTTGCAGCCTATTTGTCTGCCTGTGGAGCCACTCCTATGTACATCATCCTGCTCAGGTCTATTAAGACAGAACTAAAGTCTCTGGCTCTGGGAATCCAGACTTTGTTTGTAAGGACTCTGGGTGGAATCCCCGCCCCCATCTATTTTGGAGCACTGATTGACAGGACATGCTTGAAATGGTCCTCAAAAGCTTGTGGGAGCCATGGTGCCTGCAGACTGTATGATTCAGATGCATTCAGAAAGGATCAAAAACAGGCTCTGCAGAAACAGGCTGAGGGGAACAGCTACACACATGGACAGGAGGACcagacaaatggaaaaaaatcctCTGTAGCTTTTCTGAAGAACGAGGAGGTGGTGGAAAGGGAGTTGAGCATATAG

Function

GO: NA

KEGG:

id description
K08747 SLCO1C; solute carrier organic anion transporter family, member 1C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47775 lncRNA downstream 170187 596608 ~ 596818 (-) True G38305
TU47758 lncRNA downstream 227414 523747 ~ 539591 (-) False AMCG00012628
TU47832 lncRNA upstream 44729 837111 ~ 840487 (-) True G38355
TU47918 lncRNA upstream 786573 1578955 ~ 1583433 (-) False AMCG00012646
TU47965 lncRNA upstream 1092247 1884629 ~ 1887591 (-) True G38472
TU47966 lncRNA upstream 1108378 1900760 ~ 1901924 (-) True G38473
TU47969 lncRNA upstream 1202465 1994847 ~ 1995063 (-) True G38475
AMCG00012634 mRNA downstream 15456 745335 ~ 751549 (-) True AMCG00012634
AMCG00012630 mRNA downstream 153798 599855 ~ 613207 (-) True AMCG00012630
AMCG00012631 mRNA downstream 176352 589227 ~ 590653 (-) True AMCG00012631
AMCG00012632 mRNA downstream 192633 557829 ~ 574372 (-) True AMCG00012632
AMCG00012628 mRNA downstream 228199 514222 ~ 538806 (-) False AMCG00012628
AMCG00012638 mRNA upstream 7677 800059 ~ 816537 (-) True AMCG00012638
AMCG00012636 mRNA upstream 73749 866131 ~ 893617 (-) True AMCG00012636
AMCG00012635 mRNA upstream 122053 914435 ~ 920125 (-) True AMCG00012635
AMCG00012640 mRNA upstream 221100 1013482 ~ 1037353 (-) True AMCG00012640
AMCG00012643 mRNA upstream 246387 1038769 ~ 1345918 (-) True AMCG00012643
TU47757 other downstream 227414 523747 ~ 539591 (-) True AMCG00012628
TU47949 other upstream 984472 1776854 ~ 1777221 (-) True G38458
TU47984 other upstream 1391503 2183885 ~ 2184163 (-) True G38490
TU49217 other upstream 5663339 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 8320059 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 11448014 12240396 ~ 12253443 (-) True AMCG00012888

Expression Profile