RNA id: TU47823


Basic Information

Item Value
RNA id TU47823
length 503
RNA type TUCP
GC content 0.41
exon number 4
gene id AMCG00012639
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 778908 ~ 839266 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTATTTTATCTCTGCACCAAAAGAACATGAACTTGCCCTTCTTGGATGGAACAGAATAACAAATGTTCCTCATGGCATTGTCATTTGCCTATTTCGCAAAGGCATTATCTGGGAGCTACATGAAAAGCACAATAACCCAGCTGGAGAGACGATTTGATATCCCAAGTTACTTAATAGGAGTCATTGATGGCAGCTTTGAAATAGGGAATTTGCTGGTCATAGCGTTCGTGAGCTACTTCGGGGCCAAGCTTCACAGACCAAAAATTATTGCAGTTGGGTGCCTCCTGATGTCCATTGGAACGTTTCTAATAGCAATGCCACATTTCTTCATTGGACGCTATAAGTTTGAAACGACAATTAGATCATCAGTGAACTCAACAAACAACCTTTCTCCTTGTCCAGCAAATTCACATGAGGCAGTGACAGCTCGTGACAAGCCATCTATAGTGCCAAGTGCAGGTAATGTATTCACTGTTCATTATTATGAAGTTACGCTACTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47736 lncRNA upstream 276871 523730 ~ 543653 (+) True G38268
TU47834 lncRNA downstream 23331 848039 ~ 853017 (+) True G38356
TU47838 lncRNA downstream 41429 866137 ~ 866383 (+) True G38359
TU47842 lncRNA downstream 68603 893311 ~ 893586 (+) True G38363
TU47843 lncRNA downstream 95157 919865 ~ 920124 (+) True G38364
TU47858 lncRNA downstream 263161 1087869 ~ 1088192 (+) True G38379
AMCG00012633 mRNA upstream 43776 638993 ~ 776748 (+) True AMCG00012633
AMCG00012629 mRNA upstream 261522 542979 ~ 559002 (+) True AMCG00012629
AMCG00012627 mRNA upstream 312861 477795 ~ 507663 (+) True AMCG00012627
AMCG00012622 mRNA upstream 696267 21980 ~ 124257 (+) True AMCG00012622
AMCG00012641 mRNA downstream 570131 1394839 ~ 1581388 (+) True AMCG00012641
AMCG00012645 mRNA downstream 936549 1761257 ~ 1769703 (+) True AMCG00012645
AMCG00012644 mRNA downstream 953899 1778607 ~ 1807616 (+) True AMCG00012644
AMCG00012647 mRNA downstream 1076060 1900768 ~ 1901673 (+) True AMCG00012647
AMCG00012650 mRNA downstream 1440865 2265573 ~ 2295248 (+) True AMCG00012650
TU48550 other downstream 3545605 4370313 ~ 4373574 (+) True G38954
TU48986 other downstream 4727709 5552417 ~ 5552767 (+) True G39297
TU49057 other downstream 4983138 5807846 ~ 5823320 (+) False AMCG00012718
TU49223 other downstream 5692700 6517408 ~ 6517921 (+) False AMCG00012748
TU49477 other downstream 6900780 7725488 ~ 7727828 (+) True G39670

Expression Profile