RNA id: AMCG00012640


Basic Information

Item Value
RNA id AMCG00012640
length 972
RNA type mRNA
GC content 0.57
exon number 2
gene id AMCG00012640
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 1013482 ~ 1037353 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgGCGATGACGCTCGAGTCATCAGATCATTTCAGGGGTAAATCCAGCTGCAGTTACGAACAGAAATGCCCGGGGCCAGTGGAGCGCAATGGCTATGTGCAGACGTGTGTTGCCCCTCTGTTTCCGGACTCGGACTGGGGGTCGTGGGTGAGACTGCTGCTGATTAAGATCTGGAGGTCTAGAGGACTGTCGTCTGCGGTGTGTGTGGGGTCGCTTTCGGTTTTTCTCACTCTGGTGGTTAAATTTGCAAACGGCGAGATTGAGTacagcagtagtagcagcagcagcagcagtggcacCACGCTGATCGGGACCTCTACCAATTCCTTCTCGGTGCGCGCAGGAGAGCTCTTGCTTTCTTGGTGGCAGTTGATTTCTCCTCTCTTCACCTTACTATGTGCCTTCTTCTGGGTCGGCTTGTATGTAATCCGCTGTGGAGTCCTTTGCCAAACTGCCCTTTTCCTCCTGACAGTCTGCCACTTGGGCGAAGCGGCTGCCCAGAGTCTCCTGCGCGGCGGTGTCGAAGCGGATGAGCAGCTCCTGTCCTTCACCGCGACCGTGGTGGTCCTCGCCTGCCTGGCCAGCGGGGCACTCATGGTGGTAAGACTGAAACAGGGGGTGTCGCTCATCGTCTGTGTCAGCTTGGTCAGGACCATCTCCCTCCTTTCACTGAACAAGGTGCGGGCGAGCTGGAGACCCTATCTGGCGTACCTGGTCGGAGTGCTGGGCATCCTGCTGGCGAGGTATGCGGACAGGCTGCTGCCGAGCGAAGGGAGACGCAGAGAGGGCTGGACCTCCGTGACTGCGGCGAAGGAAGAGATCCCGGTATTTAAAAGGAGAAGGAGGTCCAGCTCTGTTATATCCTCAGACATGGCACACAGTcagcccagcagcagcagcaagtcACGCAGGAGGACTTCGCTTCCATGCATTCAAAGGGACCAGgaAAGGTTCACTAAACCCCTCAGGTGA

Function

GO:

id name namespace
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47832 lncRNA downstream 172995 837111 ~ 840487 (-) True G38355
TU47775 lncRNA downstream 416664 596608 ~ 596818 (-) True G38305
TU47758 lncRNA downstream 473891 523747 ~ 539591 (-) False AMCG00012628
TU47918 lncRNA upstream 541602 1578955 ~ 1583433 (-) False AMCG00012646
TU47965 lncRNA upstream 847276 1884629 ~ 1887591 (-) True G38472
TU47966 lncRNA upstream 863407 1900760 ~ 1901924 (-) True G38473
TU47969 lncRNA upstream 957494 1994847 ~ 1995063 (-) True G38475
TU47972 lncRNA upstream 994484 2031837 ~ 2032211 (-) True G38478
AMCG00012635 mRNA downstream 93357 914435 ~ 920125 (-) True AMCG00012635
AMCG00012636 mRNA downstream 119865 866131 ~ 893617 (-) True AMCG00012636
AMCG00012638 mRNA downstream 196945 800059 ~ 816537 (-) True AMCG00012638
AMCG00012637 mRNA downstream 221100 767005 ~ 792382 (-) True AMCG00012637
AMCG00012634 mRNA downstream 261933 745335 ~ 751549 (-) True AMCG00012634
AMCG00012643 mRNA upstream 1416 1038769 ~ 1345918 (-) True AMCG00012643
AMCG00012642 mRNA upstream 322970 1360323 ~ 1582270 (-) True AMCG00012642
AMCG00012646 mRNA upstream 545960 1583313 ~ 1817200 (-) True AMCG00012646
AMCG00012649 mRNA upstream 1278649 2316002 ~ 2317119 (-) True AMCG00012649
AMCG00012648 mRNA upstream 1282174 2319527 ~ 2345217 (-) True AMCG00012648
TU47757 other downstream 473891 523747 ~ 539591 (-) True AMCG00012628
TU47949 other upstream 739501 1776854 ~ 1777221 (-) True G38458
TU47984 other upstream 1146532 2183885 ~ 2184163 (-) True G38490
TU49217 other upstream 5418368 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 8075088 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 11203043 12240396 ~ 12253443 (-) True AMCG00012888

Expression Profile