RNA id: AMCG00012641


Basic Information

Item Value
RNA id AMCG00012641
length 1902
RNA type mRNA
GC content 0.52
exon number 13
gene id AMCG00012641
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 1394839 ~ 1581388 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTACCTGACACACCAACTGAGCAAGGACTCCTGACAGCTGGGCTCATGTTCTCATCGCTCACAGTGAAACTGCGTGCGGTGGCGGCGGTCAATGGTGATGTCTCCCCTGAACACGGGCGAAGACACTTCAGACCGGGATCCCACATTGTAGGTGCGGAGCGGGGAGTAGCCCTGGTAGAGCGCCAGCGAGCCATGGGAGGGCGAGGGAGGGATGGAGTGGGGGACATGATCGGAGATGTTGATCATGGTCTTGGGACTGGGCAGTGTGCCGTAGCCACCACTGCCGATGGGGCCCTGCTTGGTACCTGTCGCTGCTGCCACTCGTACAGCTGCCACATCGTGTCGTCCCGCATCGAGCGCCGCTTGTCGTCGGGCGCCAGGGCTCCCAGGGAGCGGTCATACACCGAGGGTGAGATGCTGCAGATGCTGTCTGGCCTTGTCACGCTGTTCCGTGGCAGCGTCCGCTCACCTTCTGTTCTCGTCCTCTTGGCCTCGTACCCTCTGTGTCCGCACCCACTGTTCGAGCTGCTGCATGGAGCTGGTCCTCTGCAGAGTCCTCTCAGGTTCCTGGTGGAGGTGCTGGTGATGATGCTGGTGGGGTGGCTGGCCTTTCTGACTGTGCATGGTGCCCATGTCCCCAGGACTCATGTTCCCTGGCCGGCTCTCCGTCGCCCCTGTGGACCCAGAACCATTGACCTGCACGGtttcgAAGTGCCCCACTTCCCGGTTCCTCTCGTTGTTCTGCAGTTCTGGCCTTGTCAGCACTCGGTGGTTCAACATGTTGTTGGCCTCTTGGCAGATGCGGTGCTCCACCTTCAGCTTTTCCAGCCTGCAAAGGAGCAGAAGCCAAAaAGGGGGAAAGCTGAGGAGAGGCTGTGGTTGAGTGACCTTCACCAGACTCCAtgtgggGTGTTGACCGCTGTGTGGCGCAGCTCGGTTGAGGTGCGGGCTGGAGCGGCCTGTCCTCCCGGAGTGCGGGCTTTGCATACCGCGCTCTTCTCTGCCaatgactgtgtgcaagcagAAATCAAGGACGTgggttttaaaaagcattttctatTTGGAGATGAACCATTAATCCACTTTATAGCTGacgaggagaaaaaagaaacatccatTAAAAACCACATACCACGGAATATCAAGACCTGTACATTCATGCTTACAGACCATCCTGGGTACACTCCAAGCATAAGACACTAtgcccaccccccaaaaaaaaataagtctaGTCACCCAAGTCTCCCCAACATTGCCGcagCTGGACACAGCAAAGAATTACCCATACAGAATGAGATTGACAGACCACTGGTGGAAGCAAATTTATTAAGaaagaaacCGCTCACCATGAGTGAATTTGTTCAGAGGAGAAATCCCCCATGCACTCCTCAACAAGCAGCCATTGTAAAAGATGCCATCCTGAATATGTTGGTAACTGACATGCGGCCAATGACCCACTTCACAAAATTGATGGAGAGGAAGTACCAGGAGGCATTCAAAAAAATAAGTGCTATAAACACCACCAACATCAGAATGACTTTAACTACTGATATATGGACAAGTGTTGCCACTGAAGCTTACCTTGGCATTACATGCCATTACATTGGGAATGACTGGAAGATGACATCTGTCTGTCTTACCACCATGCCACTCGAAGACGGACATACCTCAACCAACATTGCAGAGTGGTTGGAAGAAGTAGCAGTCAAGTTTGAAATCCCTTCTGAGAAAATTAGTGCCATCGTACATGGCAATGGTGCTAACATTGTGGTTGCTGCAAAATTACTGGAGGAGAAACATGGGTGGACCAGTATACGCTGCACTGGCCACACCTTGCAGTTGAAAACATTTGGGGAAATATTACGGCAAGCACATGCTTTTAAATCTCTACAAAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47858 lncRNA upstream 306647 1087869 ~ 1088192 (+) True G38379
TU47843 lncRNA upstream 474715 919865 ~ 920124 (+) True G38364
TU47842 lncRNA upstream 501253 893311 ~ 893586 (+) True G38363
TU47838 lncRNA upstream 528456 866137 ~ 866383 (+) True G38359
TU47834 lncRNA upstream 541822 848039 ~ 853017 (+) True G38356
TU47948 lncRNA downstream 195460 1776848 ~ 1777250 (+) True G38457
TU47968 lncRNA downstream 413456 1994844 ~ 1995085 (+) True G38474
TU47978 lncRNA downstream 518736 2100124 ~ 2100390 (+) True G38484
TU47983 lncRNA downstream 602503 2183891 ~ 2184138 (+) True G38489
TU47997 lncRNA downstream 715304 2296692 ~ 2297179 (+) True G38503
AMCG00012639 mRNA upstream 555573 778908 ~ 839266 (+) True AMCG00012639
AMCG00012633 mRNA upstream 618091 638993 ~ 776748 (+) True AMCG00012633
AMCG00012629 mRNA upstream 835837 542979 ~ 559002 (+) True AMCG00012629
AMCG00012627 mRNA upstream 887176 477795 ~ 507663 (+) True AMCG00012627
AMCG00012622 mRNA upstream 1270582 21980 ~ 124257 (+) True AMCG00012622
AMCG00012645 mRNA downstream 179869 1761257 ~ 1769703 (+) True AMCG00012645
AMCG00012644 mRNA downstream 197219 1778607 ~ 1807616 (+) True AMCG00012644
AMCG00012647 mRNA downstream 319380 1900768 ~ 1901673 (+) True AMCG00012647
AMCG00012650 mRNA downstream 684185 2265573 ~ 2295248 (+) True AMCG00012650
AMCG00012653 mRNA downstream 752487 2333875 ~ 2359147 (+) True AMCG00012653
TU47823 other upstream 570131 820524 ~ 824708 (+) False AMCG00012639
TU48550 other downstream 2788925 4370313 ~ 4373574 (+) True G38954
TU48986 other downstream 3971029 5552417 ~ 5552767 (+) True G39297
TU49057 other downstream 4226458 5807846 ~ 5823320 (+) False AMCG00012718
TU49223 other downstream 4936020 6517408 ~ 6517921 (+) False AMCG00012748
TU49477 other downstream 6144100 7725488 ~ 7727828 (+) True G39670

Expression Profile