RNA id: AMCG00012643


Basic Information

Item Value
RNA id AMCG00012643
length 1122
RNA type mRNA
GC content 0.53
exon number 14
gene id AMCG00012643
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 1038769 ~ 1345918 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATCTACACACTAACCCCCCTCTGCATGTGGATTATGGCTTCAAGGTGGCAGACAATGAGTCAAATCCTAACATCTGGAGTCCTGGATTTTTCCACATGCTGGAGTTGAGAGTGAAGCTAGTCGAACGGTCCCCATCTGGCACAGCGTTAACATCCACGGAGGTTTCAGATGAGAGGTCTCATTTGGGTATCAGCAGCACCCTGATGGACATGGAGAGCACTGTGTCCAGCGGGCGTTCCACGCCAGCCATGATGAATGGCCAGGGCAGCGTCACGCCCTCTGCCAAGAGCATTGCCTACACCTGCTGTTGGGACCAGTGTCACAGCTGCTTCAATTCCAGCCCCGACCTGGCCGAGCACATCCGCTCCCTCCATGTGGACGGACAGAGAGGCGGGgtttttgtatgtttgtggaAAGGCTGTAAAGTGTACAACACACCCTCCACCAGCCAGAGCTGGCTTCAGAGACACATGCTGACACACAGCGGAGACAAGCCTTTCAAGtgtgtggttGGGGGCTGCAATGCCAGCTTTGCATCTCAGGGTGGTCTGGCTCGGCACGTCCCCACACATTTCAGCCAGCAGAACTCCTCCAAGGTGTCCAGCCAGCCCAAGGTGAAGGAAGAGTCCCCCTCAAAAGCCGGCATGAACAAGAGGAggaagttaaaaaacaaacgcCGTAGATCACTACCGAGGCCTCATGATTTCTTTGACGCACAAACTATGGATGCCATTCAGGGCAAGGCGGCATGGCTGAACTTAGAGACACGCATAGAGAGCATGGGGAATGGGCACAGTGTCGTTTTTGATAGCACAACGGTGTTTGTTGTGTCTCCGCAGAACAATGCCACAGAAGAGACCGAAGCGGAGctctaCCTTGTGTTCCTTGGACAAAGTGCTGTGGTGTCTCCAAGGATGGAGCCCTGTGACTTCCACATGGAGCTGGAAGACAAAGTGCTGAAAAAGATACTTAAGTGGCTCACAGGTGTTCAGAATGGCTTCAGGTGCAGCAGACTTCCAGACCCACAGGACCTCCCAGCAGCAGTGTGCGCCCCTCAGGATTCTCAGGTAAGCATCGAGGCATACCCATTACCAGAACTGAAGCCAATAGACTTTTAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K17452 AEBP2; zinc finger protein AEBP2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47832 lncRNA downstream 198282 837111 ~ 840487 (-) True G38355
TU47775 lncRNA downstream 441951 596608 ~ 596818 (-) True G38305
TU47758 lncRNA downstream 499178 523747 ~ 539591 (-) False AMCG00012628
TU47918 lncRNA upstream 233037 1578955 ~ 1583433 (-) False AMCG00012646
TU47965 lncRNA upstream 538711 1884629 ~ 1887591 (-) True G38472
TU47966 lncRNA upstream 554842 1900760 ~ 1901924 (-) True G38473
TU47969 lncRNA upstream 648929 1994847 ~ 1995063 (-) True G38475
TU47972 lncRNA upstream 685919 2031837 ~ 2032211 (-) True G38478
AMCG00012640 mRNA downstream 1416 1013482 ~ 1037353 (-) True AMCG00012640
AMCG00012635 mRNA downstream 118644 914435 ~ 920125 (-) True AMCG00012635
AMCG00012636 mRNA downstream 145152 866131 ~ 893617 (-) True AMCG00012636
AMCG00012638 mRNA downstream 222232 800059 ~ 816537 (-) True AMCG00012638
AMCG00012637 mRNA downstream 246387 767005 ~ 792382 (-) True AMCG00012637
AMCG00012642 mRNA upstream 14405 1360323 ~ 1582270 (-) True AMCG00012642
AMCG00012646 mRNA upstream 237395 1583313 ~ 1817200 (-) True AMCG00012646
AMCG00012649 mRNA upstream 970084 2316002 ~ 2317119 (-) True AMCG00012649
AMCG00012648 mRNA upstream 973609 2319527 ~ 2345217 (-) True AMCG00012648
AMCG00012655 mRNA upstream 1075690 2421608 ~ 2431840 (-) True AMCG00012655
TU47757 other downstream 499178 523747 ~ 539591 (-) True AMCG00012628
TU47949 other upstream 430936 1776854 ~ 1777221 (-) True G38458
TU47984 other upstream 837967 2183885 ~ 2184163 (-) True G38490
TU49217 other upstream 5109803 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 7766523 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 10894478 12240396 ~ 12253443 (-) True AMCG00012888

Expression Profile