RNA id: AMCG00012646


Basic Information

Item Value
RNA id AMCG00012646
length 741
RNA type mRNA
GC content 0.60
exon number 8
gene id AMCG00012646
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 1578955 ~ 1817200 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggaTGCTTCTCCATCCTGCATGCCCCCGGCCCCACTGTCCATGGCCTCAGCAGACTCCGGCCCAGGCAGGAACAGATGGCAGGATGATGCCATCATACTGGTGGCATGTGACAGGGAGGGTGGCAgctctccctctcctgcccacagcaacaacaacagcagctgtACCACCAAGAAGCCTCCACCCAGAGGCACCATCAGCCTCAAAACAGCAAAGAGTCCTTCATCCATGCTTGCGGGGACCACCCCCTGGAATCCTCATGGCCTACAGACCCTGCTCCAcaataaacaatgcaattgcAACTACCATGGAATGAAAGGCCTGCTGGGACTTGCTGGCAACAGGGAGCTGGACATAATTATGACCCTCCTGCTGGAGTCTAACCAGaaactTCTGGAGAGAAccCTGCCTGTCGAGAGTGTGTTCTGGTCTGCTCTAAATGCATGTGGGTCTCGCTCTGGGGTCTCTCGCTCGGCGTTTGGCACGCACGcgcgcacgcacgcacgcgcgCACGCGCACGCTCGCTCCCGAGAGGATTTTCTCCGCGCCGCGCGCTCCCACGGCCGCGTTGCCAGGGTTTCCCGTGCCTGCGCGGCGCGCCGCGTCGTGGACGCGCACTTCAATCTCAGTGCATTGCCAGACATGGCGGCGGATCTGAACCCTGAGTGGCTCTCCTGTCTCCCGTCTTCTTGGAGTTACGGGGTAACCCGGGACGGACGCGTCTTCTTCATCAAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47832 lncRNA downstream 742826 837111 ~ 840487 (-) True G38355
TU47775 lncRNA downstream 986495 596608 ~ 596818 (-) True G38305
TU47758 lncRNA downstream 1043722 523747 ~ 539591 (-) False AMCG00012628
TU47965 lncRNA upstream 67429 1884629 ~ 1887591 (-) True G38472
TU47966 lncRNA upstream 83560 1900760 ~ 1901924 (-) True G38473
TU47969 lncRNA upstream 177647 1994847 ~ 1995063 (-) True G38475
TU47972 lncRNA upstream 214637 2031837 ~ 2032211 (-) True G38478
TU47995 lncRNA upstream 477760 2294960 ~ 2295164 (-) True G38501
AMCG00012642 mRNA downstream 1043 1360323 ~ 1582270 (-) True AMCG00012642
AMCG00012643 mRNA downstream 237395 1038769 ~ 1345918 (-) True AMCG00012643
AMCG00012640 mRNA downstream 545960 1013482 ~ 1037353 (-) True AMCG00012640
AMCG00012635 mRNA downstream 663188 914435 ~ 920125 (-) True AMCG00012635
AMCG00012636 mRNA downstream 689696 866131 ~ 893617 (-) True AMCG00012636
AMCG00012649 mRNA upstream 498802 2316002 ~ 2317119 (-) True AMCG00012649
AMCG00012648 mRNA upstream 502327 2319527 ~ 2345217 (-) True AMCG00012648
AMCG00012655 mRNA upstream 604408 2421608 ~ 2431840 (-) True AMCG00012655
AMCG00012656 mRNA upstream 619650 2436850 ~ 2468497 (-) True AMCG00012656
AMCG00012663 mRNA upstream 1060568 2877768 ~ 2910246 (-) True AMCG00012663
TU47757 other downstream 1043722 523747 ~ 539591 (-) True AMCG00012628
TU47984 other upstream 366685 2183885 ~ 2184163 (-) True G38490
TU49217 other upstream 4638521 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 7295241 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 10423196 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 11297693 13114893 ~ 13115487 (-) True G40778

Expression Profile