RNA id: TU47918


Basic Information

Item Value
RNA id TU47918
length 620
lncRNA type read_through
GC content 0.45
exon number 4
gene id AMCG00012646
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 1578955 ~ 1817200 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCAATCTCAGTGCATTGCCAGACATGGCGGCGGATCTGAACCCTGAGTGGCTCTCCTGTCTCCCGTCTTCTTGGAGTTACGGGGTAACCCGGGACGGACGCGTCTTCTTCATCAATGAACAGGCTAAGAGTACAACCTGGTTGCATCCAGTCACGGGAGAGGCCGTCATTACTGGACATAGGAAAACTGCAGATCTACCCACTGGCTGGGAAGAAGGATACACATTTGAAGGAGCTCGGTGCTTCATAAActgacgctcttatccagggtgactggataccttgctcaagggtacaacagcactgccccacccaggatttgaacccacaaccttccagttactccacagtgctgccttttGATGCAGAGAGGCtgcatgtgatttttttttttcttctcctccaacAGGAGATATTTCCCAAAGAATCTGTATGTAACCTGTTCCAAGATCTGCATacataagttaattaaaatgatgccACTGAAAAATTATAACTGCACCAGGCAATGAATaatcacaaaaatacataaataaatgctgtattaACCTGCAAAGCGAGCTGCCTGGTTAAGATTTCAAGAGCTCTTTGATTACTCTTCATAAGCACAGCATGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47832 lncRNA downstream 738468 837111 ~ 840487 (-) True G38355
TU47775 lncRNA downstream 982137 596608 ~ 596818 (-) True G38305
TU47758 lncRNA downstream 1039364 523747 ~ 539591 (-) False AMCG00012628
TU47965 lncRNA upstream 301196 1884629 ~ 1887591 (-) True G38472
TU47966 lncRNA upstream 317327 1900760 ~ 1901924 (-) True G38473
TU47969 lncRNA upstream 411414 1994847 ~ 1995063 (-) True G38475
TU47972 lncRNA upstream 448404 2031837 ~ 2032211 (-) True G38478
TU47995 lncRNA upstream 711527 2294960 ~ 2295164 (-) True G38501
AMCG00012643 mRNA downstream 233037 1038769 ~ 1345918 (-) True AMCG00012643
AMCG00012640 mRNA downstream 541602 1013482 ~ 1037353 (-) True AMCG00012640
AMCG00012635 mRNA downstream 658830 914435 ~ 920125 (-) True AMCG00012635
AMCG00012636 mRNA downstream 685338 866131 ~ 893617 (-) True AMCG00012636
AMCG00012638 mRNA downstream 762418 800059 ~ 816537 (-) True AMCG00012638
AMCG00012649 mRNA upstream 732569 2316002 ~ 2317119 (-) True AMCG00012649
AMCG00012648 mRNA upstream 736094 2319527 ~ 2345217 (-) True AMCG00012648
AMCG00012655 mRNA upstream 838175 2421608 ~ 2431840 (-) True AMCG00012655
AMCG00012656 mRNA upstream 853417 2436850 ~ 2468497 (-) True AMCG00012656
AMCG00012663 mRNA upstream 1294335 2877768 ~ 2910246 (-) True AMCG00012663
TU47757 other downstream 1039364 523747 ~ 539591 (-) True AMCG00012628
TU47949 other upstream 193421 1776854 ~ 1777221 (-) True G38458
TU47984 other upstream 600452 2183885 ~ 2184163 (-) True G38490
TU49217 other upstream 4872288 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 7529008 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 10656963 12240396 ~ 12253443 (-) True AMCG00012888

Expression Profile