RNA id: AMCG00012652


Basic Information

Item Value
RNA id AMCG00012652
length 1818
RNA type mRNA
GC content 0.59
exon number 13
gene id AMCG00012652
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 2361338 ~ 2391704 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCAGGTGCGGCGGGACTTCGTGTCCAGTGAGGAGTTCCAGCCTGCGACTATCCGAGCTGTGTCCTCTGCCTGTGAGGGGCTGTGCAGCTGGGTCAGAGCCATCGAGGTCTATGACAGGGTGGCCAAATTCGGAACACCCATGCTGCTGGAGGATGGGGGTGAGGAGTTGGATCCAGTGCTGGAGTCACTAATGCTGAAGCCAACTCTGCGGCGAGGGGGCACGCAGACCTTCTGCCTGGGGGAGAGTACGTTGCCATACAGTCCCCACTTCCGACTGTACCTCAGTACGCGCCTGCCTAACCCACACTACCTGCCTGAGACTGCAGCCAAGGTAATGAGGCAACTGCAGCAGATTGAGGAGGAGATGCTGCATGTGCTGTCAGGCTTTGAGGGAAGTGTGCTGGAGGACGAAAGTGCTCTGTCCATCCTCTCCTCCAGCCGTTCCCTCTCCCAGGACATCCAGCACTGCCAGGCTGTCATTACGGTGACAGAAAATGAGATTGAGGCCACCAGAGATGAGTACCGGCCCACCCCTGCCTCAAACCCGGCTTCAGACTGGCTGGGAGGGGCAACCTGGAGTCAGCTGGTGTGTCTCAGCACAATGCCCTCCTTCTTGGGCCTGAGGAAGCACTTCACTAACAATAGACTGCTGGTCCTGCGCTGCCTGAGGCCTGACAAGATGATCACTGCTATCAGTCAGTTCATCTCAGACCACATGGGCCCATCATACATCGACCCTCCAGCCTTTGACTTGGCACACAGTTTTGTAGAGTCCTCCCCCGGCACCCCCTTGGCAGTGCAGGAGGGGAGCTGGGTGTTACTACAGAATTGTCACCTGACAGTGGGTTGGCTGGGGGAGCTGGGGGAGTTGTGTAATATTCATTCACTCCTCTTTCCATCTGTGGCTCACCACCTACTCTCCCCTGGTCTGCCCTCCTCCCTGCTCCGCGAGGCAGTCAAAATCACCAGCCAGCCCCCCCAGGGCCTGAGGGACACACTGCAGCGCTGCTACACCACACTCCTGCTCTCTGACCCCAACTTCCACGGAAAGACAGAACAGTGGGAGAAGTTGCTGTTCGGTATGTGTGTGTTCCATGCAGTGGTGTGTGGCCGTCGAGCATTTGGGCTGCTAGGCTGGAGTGCCCCCTATGACTTCAGCCTTTCAGACCTGCATGTCAGCATACGCCAGCTGCAGgtgCTGCTGAGCGAGAACCCAGAGGTGCCCTGGGAGGCGTTGACCTACCTGACTGGCGAGTGTAACTACGGTGGACGTGTCACCAACCCCTTCGACCGCCACTTGCTGCTCTGCCTGCTGGACACCTGCTGTTGCCCCCTGCTGCTCATCGATCCCAATTACAGTTTCCCCCCAGCGGAGTGTACCGCCTGCCACCAGGCGGCAGTGTTTGGTCTCCATGAGAACGCCAGCATCACCAAGAAGACGAAGGAGACCAGCCAACTGTTTGACAGCATACTGGCAACACTGCCCAGGGAGCAATTCTATCTTCCTGAATACAGTGAGTGTATGAACACGGTACTGCTGCAGGAGCTGGGCCGCTTCAACATGCTGCTGTGTGTGGTGCGGGGCAGCCTGGCCCAGCTGGGGCAAGCTTTGAGGGGGCAGACCCTCCTCACCCCTGAGCTGGAGGACTCCTTCAACAGCCTACTGCTTGAGAAGATCTGCCTACAGCCCAGTGAAACCAGCACACTGCCCGACCTGGCGCTTTACCTGTGCCCAGCACTCCCTGCAGCCCCGTGCGGCTCCTTCCTGCCCCCTTCTGCTGCACCTTATGGTTACCCCCCTGTTCCCACGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47997 lncRNA upstream 64159 2296692 ~ 2297179 (+) True G38503
TU47983 lncRNA upstream 177200 2183891 ~ 2184138 (+) True G38489
TU47978 lncRNA upstream 260948 2100124 ~ 2100390 (+) True G38484
TU47968 lncRNA upstream 366253 1994844 ~ 1995085 (+) True G38474
TU47948 lncRNA upstream 584088 1776848 ~ 1777250 (+) True G38457
TU48000 lncRNA downstream 22817 2414521 ~ 2431408 (+) True G38505
TU48026 lncRNA downstream 46393 2438097 ~ 2440033 (+) True G38526
TU48030 lncRNA downstream 58079 2449783 ~ 2468853 (+) True G38530
TU48033 lncRNA downstream 65053 2456757 ~ 2532789 (+) True G38531
TU48064 lncRNA downstream 225218 2616922 ~ 2617197 (+) True G38551
AMCG00012654 mRNA upstream 413 2359186 ~ 2360925 (+) True AMCG00012654
AMCG00012653 mRNA upstream 2191 2333875 ~ 2359147 (+) True AMCG00012653
AMCG00012650 mRNA upstream 66090 2265573 ~ 2295248 (+) True AMCG00012650
AMCG00012647 mRNA upstream 459665 1900768 ~ 1901673 (+) True AMCG00012647
AMCG00012644 mRNA upstream 553722 1778607 ~ 1807616 (+) True AMCG00012644
AMCG00012651 mRNA downstream 5785 2397489 ~ 2404357 (+) True AMCG00012651
AMCG00012657 mRNA downstream 108354 2500058 ~ 2540181 (+) True AMCG00012657
AMCG00012658 mRNA downstream 420294 2811998 ~ 2851213 (+) True AMCG00012658
AMCG00012659 mRNA downstream 785694 3177398 ~ 3181902 (+) True AMCG00012659
AMCG00012660 mRNA downstream 792476 3184180 ~ 3184551 (+) True AMCG00012660
TU47823 other upstream 1536630 820524 ~ 824708 (+) False AMCG00012639
TU48550 other downstream 1978609 4370313 ~ 4373574 (+) True G38954
TU48986 other downstream 3160713 5552417 ~ 5552767 (+) True G39297
TU49057 other downstream 3416142 5807846 ~ 5823320 (+) False AMCG00012718
TU49223 other downstream 4125704 6517408 ~ 6517921 (+) False AMCG00012748
TU49477 other downstream 5333784 7725488 ~ 7727828 (+) True G39670

Expression Profile