RNA id: AMCG00012655


Basic Information

Item Value
RNA id AMCG00012655
length 2445
RNA type mRNA
GC content 0.48
exon number 8
gene id AMCG00012655
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 2421608 ~ 2431840 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGTCAGGAAAGGACAAATTGATTAAGCGCGAGGACGTCCGGCCTCTCCCACCACCCAGGAATATGTATCCCACCACGCTGACACAGTTGGCACGGGTGAACCCGTTTTGTGCCCCGGTGTTCGCTCTGCAGAAAGTGGAGGAGCCCCGACAGAGCACCGCCGTCCAGGGGCAGAACAGTCGTCGCCTCGCCGCCGCCGCAGTGTCCGTAGAGGAGGGGGACAGCTGTGAGTTCGGCTCCcagaaatattttcttctctgtGGCTTGGGTGGGATTCTTAGCTGTGGCACAACGCACACAGCTGTCGTGCCCTTAGACCTGATTAAATGCAGGATACAGGTGAATCCAGACAAGTACAAGAGCATTTTCAAGGGTTTCTCCATCACTATCCGAGAGGATGGGCTCAGGGGCCTGGCCAAGGGCTGGGCACCCACATTCTTTGGGTACTCCATGCAGGGGCTGTGCAAGTTCGGCTTCTATgaggtgtttaaaataatgtacgGCGACCTGATGGGCGAGGAAAATGCCTACATGTGGAGGACTTCCTTGTACCTGGCTGCATCGGCCAGTGCCGAGTTCTTTGCAGACATTGCCCTGGCACCCATGGAGGCCGTGAAGGTGAGAATCCAGACCCAGCCGGGCTTCGCCAACACCCTGCGACAGGCTTTGCCCAAGATGTATGCTGAGGAGGGGCTGTGGGCCTTCTACAAGGGTGTGGTCCCTCTCTGGATGAGGCAGATCCCCTACACCATGATGAAGTTTGCCTGCTTTGAGCGCACTGTGGAGGCATTGTACAAGTTTGTGGTGCCCAAGCCCCGCAATGAGTGCACCAAGAGCGAGCAGCTGGTCGTCACCTTTGTGGCTGGATACATTGCTGGTGTATTCTGTGCCATTGTATCTCACCCTGCTGACTCTGTGGTGTCTGTGCTGAATAAAGAGAAGGGAAGCACTGCCATGCAAGTCCTCAAGAAGCTAGGAGTTAAAGgTGTGTGGAAGGGCCTGGTCGCCCGTATTATCATGATTGGTACCCTTACGGCCCTGCAGTGGTTCATCTACGACTCTGTGAAGGTGTACTTCAGGCTgccccgcccccctcccccagagATGCCCGAGTCCCTGAAGAAGAAGTTAGGGCTGACTGAGTAACCTGGGCAGCTTGTGATCCCGGTTAACCCAACATCACAGCATTTCATCCACACCCCTTTTaaaattttgtatatttaaaaacaaaagtatatgaCAATGGGATGTGGCAGTTTTCCCCCACAGGCCTGATctgatgtaaatgtatattattgtgGAAGTAGTCTGGGAGATTGGGTTGTTCCTTACTGAGGGGGAGGAGGACCCAGGAATGAGTTTGTTTTATCAACTCTTTAGTTTGTGGGGAGGTACagaacaatacaacaataaactCTGGAACCACACAGAACTTGAAATGGCTGTTCATTTTCCTTATCAACCTGTTGAATGTTTTTGATTTCCATAGAAGTTATTAATCTGGAATTTACCCTAAACAAGCAGTTGTAATGCAATGGAAACTTCAATATACTGTGACTGTAGTTTGGATGTTGCATTTATCCTTTTCGGCATTAaggtgtgtatgttttattgtgacCAGTTGTACAGAACATGAGCTCTTCATGTCCAAGGAATGGTTGTGTCCTTCTGAACCTCTAGAACAGGAGcatcagactccagtcctgggagggtgcagtgtctgctggtttttgttccagcaggagctcccaattttatttatgtaaaattatctAAAACTGCTGATGCATTAGTATGTTGATGAACTCACAGAACATTTGTcttaaattaatccagttaattgtttaattagaccaattaaggagccaagagctggacTGGAACAAATCCAGCAGACACTGGCCCCCCATGACTGGAATCCGACACCTCAACTATACAAGTTATTCCTAAATTGGTACATGTGGCACTTTACTCATGCCTGTCCATTTGTATCCATTAGCAATAAAGGTTTTTCACCAATcctaatgctttttatttttagaacttTTGTAGGGAAGTGTCCGTGACACCATGGGTGGTGCATTTTGACCGCAATTCTCCGTTCCACTAGCCACGTTATCTGCACCTCAGCATGGCCATTCCGGTCCGGTTTCCgctagggctcagctgcacctctgCCTGTGCCCGGACATCGTCCCAAACTGGTATGGGGCATGTACTGTAATGTCCCCGATGCCACACCACTAcatttggaaattgtaactacagtaacGGTGGCCACTGTCGATGCGAGAGATGTGGTAgaaacttttccaaagaaggaATGTGTGATTTACCTTGGGAAAAATTTTCAgctggagcagttattaatatATGGTGgagcagaaatacattttaagaatgtttGAAAAGTTCCCGAAAGTCCggctggagaaaggactg

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15102 SLC25A3, PHC, PIC; solute carrier family 25 (mitochondrial phosphate transporter), member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47995 lncRNA downstream 126444 2294960 ~ 2295164 (-) True G38501
TU47972 lncRNA downstream 389397 2031837 ~ 2032211 (-) True G38478
TU47969 lncRNA downstream 426545 1994847 ~ 1995063 (-) True G38475
TU47966 lncRNA downstream 519684 1900760 ~ 1901924 (-) True G38473
TU47965 lncRNA downstream 534017 1884629 ~ 1887591 (-) True G38472
TU48044 lncRNA upstream 67083 2498923 ~ 2500343 (-) True G38533
TU48051 lncRNA upstream 132465 2564305 ~ 2564702 (-) True G38539
TU48062 lncRNA upstream 173658 2605498 ~ 2605768 (-) True G38549
TU48065 lncRNA upstream 191149 2622989 ~ 2623189 (-) True G38552
TU48086 lncRNA upstream 294189 2726029 ~ 2775202 (-) True G38573
AMCG00012648 mRNA downstream 76391 2319527 ~ 2345217 (-) True AMCG00012648
AMCG00012649 mRNA downstream 104489 2316002 ~ 2317119 (-) True AMCG00012649
AMCG00012646 mRNA downstream 604408 1583313 ~ 1817200 (-) True AMCG00012646
AMCG00012642 mRNA downstream 839338 1360323 ~ 1582270 (-) True AMCG00012642
AMCG00012643 mRNA downstream 1075690 1038769 ~ 1345918 (-) True AMCG00012643
AMCG00012656 mRNA upstream 5010 2436850 ~ 2468497 (-) True AMCG00012656
AMCG00012663 mRNA upstream 445928 2877768 ~ 2910246 (-) True AMCG00012663
AMCG00012664 mRNA upstream 489861 2921701 ~ 2962489 (-) True AMCG00012664
AMCG00012665 mRNA upstream 655596 3087436 ~ 3100475 (-) True AMCG00012665
AMCG00012662 mRNA upstream 689360 3121200 ~ 3170801 (-) True AMCG00012662
TU47984 other downstream 237445 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 644387 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 1882017 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 4023881 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 6680601 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 9808556 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 10683053 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 15448385 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00047347 False 1279 mRNA 0.57 8 NC_007136.7 3306620 ~ 3321135 (+)
grasscarp (Ctenopharyngodon idella) CI01000127_01668221_01681515.mRNA False 3371 mRNA 0.51 15 CI01000127 1667411 ~ 1681739 (+)