RNA id: AMCG00012656


Basic Information

Item Value
RNA id AMCG00012656
length 1775
RNA type mRNA
GC content 0.56
exon number 9
gene id AMCG00012656
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 2436850 ~ 2468497 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGGAATTTCTCGAAGACCCGTCGGTCCTCACCAAGGAGAAACTAAAGAGCGAGCTGCTGGCCAATAACGTGGTGCTCCCGAGCGGCGAGCAGAGGAAAGACGTCTATGTTCAGCTCTACTTGCAAAACCTCACCGTCCAAAACAAACCCAAGAAGAATAAAATGCCTCCGGAGACTTTTTCCAGCGATGACGAGCTACCTCCCCCCGTGGTGGCCAACAAAAACCGCTCCGGAAGGAAAGCCACAAGGAAGACGGACAAGCCGCGGCCAGAGGACCTGGATGTCACAGAGCTAAGCGATGAGGACCTGAAGGACCAACTGATGAAATACGGGGTCAACGCTGGCCCTGTTGTAGCTTCAACCAGGAAACTATATGAAAAGAAACTACAGAAACTCCTAGACCATGGCCCGCCTGAGATGCAACTGCCACAACCCGTCCCGGCCCTGGCCCCCACCCCTGCCTCTGCCCCCCCAAAGGCGGTTGACAGCAACCAGAATGGCAACACAGACTGCGACCAGTACAGCGACAACGAGGCGGATGAGAAGCCAGAGCCAGTGGTGGAGAAGCTGGAGCCAGTGAAACCTAGAGCGAAAGTCCCAGTAAACCTCAGGACCCGGCGCCTTGAGCACAATAAACCTACCAAGCcccagcagcaacaacaacaacagcagcaggaggaagatgaTGAGGACAGAAATGGAGGGGAAGAGCATGAGCAGGGCATCCTAAATGTCAAGAGAAAGTCCAGgagacaaccccccccccaggaCCAGACTGTCCCAGCCAGTGACGACACTGACCACTCTGAAATTTCAGCCCCCGAGTCTGTTTCACTATCATGGGAGTGTGGAGGTGCCAGGACCTCAAAACGAGGGGTCCTGTCCAAGCCAGGTGAGGTGGAAGAGGACCTTGAGATGCAGCCCCCAGCCCTGCTGCCTGAGCTGTCCACCCTGGAGCCCATCTCTctgcacaacactgcactgctggaGGTGGAGGAGAGGTTGGGCAGTGGTGACCAAGCCCCAAGAACAGAAGCAATTGATATTCTAAAGGAGATGTTCCCCAATGAGCCACACACCCCCACAGGAATCAATGCCTCATGTCGGCGGCCGATCCGTGGCGCAGCAGGACGACCCCTGCCCCCTGTGGACTTCCACTTGGAGGAGTCCCTTCTGCAGCGCACCGAACGCTCTGAGATCTCGCACTACTCCGAACATCGTGTCATACAGCGGGGGAGTGGCGGAGGGGCCAAACTGGCAGCAGCTGTCCCctattcctcctcctcctcctactcctcctcttcctccagcagCACCCTGAAGCTGTCCGCACCCAGCACAGGCAAGACACGATCGCGGCGCTCTCTACCGGTCTGGGTACAGCTGTTGCTGTTGAGCGCTGTGGCCGGTTTCCTGTTCTTCGTGTACCAAGCCATGGAGACCAATGAGATGAACCCCTTCGGAAAGCAACCTTCAGGGCGCTCAGGGTCCACTGGAGATCCCCCCAAGACTGAGTGAAAGAGCCATGGGACaggctttctttctttaactcTCCCCCTCCTTTACTCCCTTCCCCCGTCTGTCTTAAACTCCCATCTCTTGCTCTCTTAACCTATTCCATCAGATCTTTGTGTTCCCAATAAGTGGGCAAGGGTTATCTTTcccctccctccatccttcTCTGCAGATTTGCTTCCTTTACTCTTTGTGCTCAGCAGCAGTGAGTCAATCTCTTGCTTTGAGTGCNNNNNNNNNNcccccccccccaaccc

Function

GO:

id name namespace
GO:0007084 mitotic nuclear envelope reassembly biological_process
GO:0000793 condensed chromosome cellular_component
GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K24031 TMPO; lamina-associated polypeptide 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47995 lncRNA downstream 141686 2294960 ~ 2295164 (-) True G38501
TU47972 lncRNA downstream 404639 2031837 ~ 2032211 (-) True G38478
TU47969 lncRNA downstream 441787 1994847 ~ 1995063 (-) True G38475
TU47966 lncRNA downstream 534926 1900760 ~ 1901924 (-) True G38473
TU47965 lncRNA downstream 549259 1884629 ~ 1887591 (-) True G38472
TU48044 lncRNA upstream 30426 2498923 ~ 2500343 (-) True G38533
TU48051 lncRNA upstream 95808 2564305 ~ 2564702 (-) True G38539
TU48062 lncRNA upstream 137001 2605498 ~ 2605768 (-) True G38549
TU48065 lncRNA upstream 154492 2622989 ~ 2623189 (-) True G38552
TU48086 lncRNA upstream 257532 2726029 ~ 2775202 (-) True G38573
AMCG00012655 mRNA downstream 5010 2421608 ~ 2431840 (-) True AMCG00012655
AMCG00012648 mRNA downstream 91633 2319527 ~ 2345217 (-) True AMCG00012648
AMCG00012649 mRNA downstream 119731 2316002 ~ 2317119 (-) True AMCG00012649
AMCG00012646 mRNA downstream 619650 1583313 ~ 1817200 (-) True AMCG00012646
AMCG00012642 mRNA downstream 854580 1360323 ~ 1582270 (-) True AMCG00012642
AMCG00012663 mRNA upstream 409271 2877768 ~ 2910246 (-) True AMCG00012663
AMCG00012664 mRNA upstream 453204 2921701 ~ 2962489 (-) True AMCG00012664
AMCG00012665 mRNA upstream 618939 3087436 ~ 3100475 (-) True AMCG00012665
AMCG00012662 mRNA upstream 652703 3121200 ~ 3170801 (-) True AMCG00012662
AMCG00012666 mRNA upstream 734657 3203154 ~ 3272283 (-) True AMCG00012666
TU47984 other downstream 252687 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 659629 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 1897259 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 3987224 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 6643944 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 9771899 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 10646396 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 15411728 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile