RNA id: AMCG00012672


Basic Information

Item Value
RNA id AMCG00012672
length 963
RNA type mRNA
GC content 0.58
exon number 4
gene id AMCG00012672
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 3727446 ~ 3729646 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTCTTCCCTGTGGTGGTGTGTGTTTTGCTGGGCTCTGGGCTCGGGTTTGACCTGGGCCAGTCAACCCGCTGTGTGGCCATCCCCCCTCAGCTGGCAGTGTGCCAGGACGTGGGCTACAGTGAGATGCGTCTTCCCAACTACCTGGGGCATCGCAGCCTGCAGGGTGAGGTGGTGCCACGCTCTGAGGACTGGCGTCCCCTGCTGCAGACTGGCTATAGGAGgttctctttatctctctctctctctgtgttttgttgcaGGTTTATCCAGCCATGTCACAGCCTGTGTTTGGCAGTGAGGGACAGCTGTGCACCAGTGCTGGCGTGTTGGGGTCAGCTATGGCCTGACGCACTGGACTGTGATCGCTTTCCAGACCATGAGGAAATGTGTCTCACCCCTGCATCCAAACAGGTCGAGCACATAATTAAAGGTAATTCCCCCCTACCCTGTCCCACCCTTCCCAGTATCCAGGACATTAGGGAGCTATCAACATACCAAGCTTTACTGATCAGTCTCACTCCTGGATCTTCAATCCCCTCTCTTATGGCAAGCCACCTAACAAAAATTTTTCCCCAGCCAGGATGCCAGGACTGCCCTGCCATGGAGGAGCATTCCTCCCACAAGACTGTGCTGGATGCACTCTGCCAAAATGACTTTGCAGTGAAGGTGCTAGTGTCCCAGCGGCGGTTGGAGCCCGAGTTCACTGTGGAGGGGCGAGTGGAGTTTGTGCATCAGGGGCCCCTGCTGCCCTTCAACACACACAGTCTGCTGCAGCAGTGGCTCCTCCTCCACCCGCACTGCGCCCCTGGCCTGGCACGCCCCAGCCGTACGCAGCTTCACCTACTGGTTGGGGTGGTACAGCCCGATGGCATGCTGGTACTCAGCCGCGTCTTCCCCTGGCACAAGAGGGACGCAGAGCTCACCACCGCTGTGCGAAAGTGGAAACACCACAAATGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48345 lncRNA downstream 88580 3554385 ~ 3638866 (-) True G38791
TU48349 lncRNA downstream 165596 3506837 ~ 3561850 (-) True G38792
TU48287 lncRNA downstream 296110 3429936 ~ 3431336 (-) True G38743
TU48283 lncRNA downstream 379799 3311332 ~ 3347647 (-) True G38740
TU48180 lncRNA downstream 805784 2916028 ~ 2921662 (-) True G38650
TU48413 lncRNA upstream 53514 3783160 ~ 3783391 (-) True G38841
TU48414 lncRNA upstream 54158 3783804 ~ 3784050 (-) True G38842
TU48496 lncRNA upstream 244707 3974353 ~ 3976596 (-) True G38909
TU48498 lncRNA upstream 307793 4037439 ~ 4096741 (-) True G38910
TU48565 lncRNA upstream 397361 4127007 ~ 4517632 (-) True G38965
AMCG00012674 mRNA downstream 6046 3678679 ~ 3721400 (-) True AMCG00012674
AMCG00012670 mRNA downstream 64233 3652207 ~ 3663213 (-) True AMCG00012670
AMCG00012668 mRNA downstream 306418 3349631 ~ 3421028 (-) True AMCG00012668
AMCG00012666 mRNA downstream 455163 3203154 ~ 3272283 (-) True AMCG00012666
AMCG00012662 mRNA downstream 556645 3121200 ~ 3170801 (-) True AMCG00012662
AMCG00012671 mRNA upstream 9098 3738744 ~ 3754995 (-) True AMCG00012671
AMCG00012673 mRNA upstream 27449 3757095 ~ 3772987 (-) True AMCG00012673
AMCG00012676 mRNA upstream 132402 3862048 ~ 3863424 (-) True AMCG00012676
AMCG00012677 mRNA upstream 251144 3980790 ~ 3990090 (-) True AMCG00012677
AMCG00012678 mRNA upstream 285526 4015172 ~ 4024403 (-) True AMCG00012678
TU47984 other downstream 1543283 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 1950225 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 3187855 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 2726075 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 5382795 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 8510750 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 9385247 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 14150579 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile