RNA id: AMCG00012674


Basic Information

Item Value
RNA id AMCG00012674
length 1410
RNA type mRNA
GC content 0.54
exon number 14
gene id AMCG00012674
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 3678679 ~ 3721400 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCGGCGAAGATGGCAAGGATGAGAAGACGATTGGGGAGGAAGAAGATGGCAGGGTTGGGACCGTACAGCAGTCACCAAGGAGGTGCCCTCTTTGTCCGCATTGCCAACAGATGCGAGTGTTGGGTTTTCTCTGCTCCGATGCGGTGTCCTCCATGGATAAGatgcCAAGGAAGAAAAATTGGAGAAAATCTGTGGTAAAGAAGGGACATTTTTATGATGCCCCTAAAGACCTGTCGAACGAGGCCAACGTGCCGCCCCCTCAGGCCAACCTGAGCATCACGGATTACCACTCGCCGAGGAAGAGGGAAACTAGTGAAAGAGATAGACCGGCAGACAGAGAAAGCCGGCCGGCGTCTTCAGAGCTGCGATTATTAAACCAAGTCAGCTCGTCCAGCCATCACTGCAGCGTGGAGCTGAGGCCGGACTTTGGGCAAGGAGCATACGGCACCATGACCGCCAGACCCGGCTTTTACCGGCAGGAGCTGAACAAGACTGTATGGGAGGTTCCGGAGCGGTACCAGAACCTCACACCCGTGGGCTCGGGGGCCTATGGCTCGGTGTGctcAGCATATGATGTGCGTCTGCGTCAGAAGGTGGCAGTGAAGAAGCTGTCCCGGCCATTCCAGTCTCTGATTCATAGCCGTCGCTCCTATAGAGAACTCCGCCTGCTCAAACACATAAAGCACGAAAACgtgATTGGTTTATTGGATGTGTTCTCTCCAGCCACGTCTCTGGAGGATTTCAATGAAGTttacCTGGTGACTAACTTGATGGGCGCTGATCTGAACAACATTGACCTGAAGCCCAGCAACGTGGCTATCCTGGATTTTGGGCTGGCCAGACAGACTGATGATGAGATGACCGGTTATGTGGCGACTCGCTGGTACAGAGCGCCAGAGATCATGCTCAACTGGATGCACTACACACAGACAGTGGATATCTGGTCGGTGGGATGCATCATGGGAGAGCTCATCAAAGGGAAGGTCCTGTTTCCTGGCAATGACTACATCGACCAGCTGAAGAGAATCATGGAGGTGGTGGGAACGCCCAGCCAAGAGCTGCTGAAGAAAATCTCCTCTGAACATGCACAAAAATACATCCAGTCTCTGCCCTACATGCCCCAGCAGGACCTGGAGAAGATATTTCGTGGAGCCAACCCGctggCGGTGGACCTGTTGAAGCGGATGCTGCTCCTAGACTGTGACAGTCGTGTGACAGCAGCAGAGGCCCTGGCTCACCCCTACTTCTCACAGTACCATGATCCTGAGGATGAGCCTGAGGCCCCACCCTATGACCAGACCCCTGAGAGCAAGGACCGCACACTAGAGGAGTGGAAGGagTTGGTGTTTGAGGAGATGAACAGCTTCAAGCCTCCCAGCAGTAAGAAAGAGAGTCTGCAGGTGGAA

Function

GO:

id name namespace
GO:0000165 MAPK cascade biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG:

id description
K04441 P38; p38 MAP kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48345 lncRNA downstream 39813 3554385 ~ 3638866 (-) True G38791
TU48349 lncRNA downstream 116829 3506837 ~ 3561850 (-) True G38792
TU48287 lncRNA downstream 247343 3429936 ~ 3431336 (-) True G38743
TU48283 lncRNA downstream 331032 3311332 ~ 3347647 (-) True G38740
TU48180 lncRNA downstream 757017 2916028 ~ 2921662 (-) True G38650
TU48413 lncRNA upstream 61760 3783160 ~ 3783391 (-) True G38841
TU48414 lncRNA upstream 62404 3783804 ~ 3784050 (-) True G38842
TU48496 lncRNA upstream 252953 3974353 ~ 3976596 (-) True G38909
TU48498 lncRNA upstream 316039 4037439 ~ 4096741 (-) True G38910
TU48565 lncRNA upstream 405607 4127007 ~ 4517632 (-) True G38965
AMCG00012670 mRNA downstream 15466 3652207 ~ 3663213 (-) True AMCG00012670
AMCG00012668 mRNA downstream 257651 3349631 ~ 3421028 (-) True AMCG00012668
AMCG00012666 mRNA downstream 406396 3203154 ~ 3272283 (-) True AMCG00012666
AMCG00012662 mRNA downstream 507878 3121200 ~ 3170801 (-) True AMCG00012662
AMCG00012665 mRNA downstream 578204 3087436 ~ 3100475 (-) True AMCG00012665
AMCG00012672 mRNA upstream 6046 3727446 ~ 3729646 (-) True AMCG00012672
AMCG00012671 mRNA upstream 17344 3738744 ~ 3754995 (-) True AMCG00012671
AMCG00012673 mRNA upstream 35695 3757095 ~ 3772987 (-) True AMCG00012673
AMCG00012676 mRNA upstream 140648 3862048 ~ 3863424 (-) True AMCG00012676
AMCG00012677 mRNA upstream 259390 3980790 ~ 3990090 (-) True AMCG00012677
TU47984 other downstream 1494516 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 1901458 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 3139088 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 2734321 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 5391041 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 8518996 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 9393493 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 14158825 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile